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4AKD
Asym. Unit
Info
Asym.Unit (205 KB)
Biol.Unit 1 (197 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF MANNOSE BINDING LECTIN FROM CHAMPEDAK (CMB)
Authors
:
M. Gabrielsen, P. S. Abdul-Rahman, S. Othman, O. H. Hashim, R. J. Cogdel
Date
:
22 Feb 12 (Deposition) - 27 Feb 13 (Release) - 18 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Gabrielsen, P. S. Abdul-Rahman, S. Othman, O. H. Hashim, R. J. Cogdell
Structures And Binding Specificity Of Galactose- And Mannose-Binding Lectins From Champedak: Differences From Jackfruit Lectins
Acta Crystallogr. , Sect. F V. 70 709 2014
(for further references see the
PDB file header
)
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
8
Ligand/Ion
CADMIUM ION
2
CL
7
Ligand/Ion
CHLORIDE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:69 , HOH A:2043
BINDING SITE FOR RESIDUE CD A1151
02
AC2
SOFTWARE
ASP B:115 , CD B:1153 , CL B:1154 , CL B:1155 , CL B:1156 , ASP D:115
BINDING SITE FOR RESIDUE CD B1151
03
AC3
SOFTWARE
ASP B:115 , CL B:1154 , CL B:1155 , CL B:1157
BINDING SITE FOR RESIDUE CD B1152
04
AC4
SOFTWARE
CD B:1151 , CL B:1156 , ASP D:115
BINDING SITE FOR RESIDUE CD B1153
05
AC5
SOFTWARE
CD B:1151 , CD B:1152 , GLU D:117
BINDING SITE FOR RESIDUE CL B1154
06
AC6
SOFTWARE
ASP B:115 , CD B:1151 , CD B:1152 , PHE D:87 , ARG D:98 , ASP D:115
BINDING SITE FOR RESIDUE CL B1155
07
AC7
SOFTWARE
SER B:88 , CD B:1151 , CD B:1153 , ASP D:115
BINDING SITE FOR RESIDUE CL B1156
08
AC8
SOFTWARE
CD B:1152 , SER D:88 , ARG D:98
BINDING SITE FOR RESIDUE CL B1157
09
AC9
SOFTWARE
GLU A:117 , CD C:1152 , CL C:1154 , CL C:1155
BINDING SITE FOR RESIDUE CD C1151
10
BC1
SOFTWARE
SER A:88 , GLU A:117 , ASP C:115 , CD C:1151 , CL C:1153 , CL C:1154
BINDING SITE FOR RESIDUE CD C1152
11
BC2
SOFTWARE
SER A:88 , CD C:1152
BINDING SITE FOR RESIDUE CL C1153
12
BC3
SOFTWARE
PHE A:87 , ARG A:98 , ASP C:115 , CD C:1151 , CD C:1152
BINDING SITE FOR RESIDUE CL C1154
13
BC4
SOFTWARE
ASP A:115 , GLU A:117 , CD C:1151 , CD C:2000
BINDING SITE FOR RESIDUE CL C1155
14
BC5
SOFTWARE
ASP A:115 , GLU A:117 , CL C:1155
BINDING SITE FOR RESIDUE CD C2000
15
BC6
SOFTWARE
GLU D:74 , HOH D:2047 , HOH D:2071 , HOH D:2072
BINDING SITE FOR RESIDUE CD D1151
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4akda_ (A:)
1b: SCOP_d4akdb_ (B:)
1c: SCOP_d4akdc_ (C:)
1d: SCOP_d4akdd_ (D:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
automated matches
(2)
Artocarpus integer [TaxId: 3490]
(1)
1a
d4akda_
A:
1b
d4akdb_
B:
1c
d4akdc_
C:
1d
d4akdd_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Protein & NOT Variant
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Chain D
Asymmetric Unit 1
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Asym.Unit (205 KB)
Header - Asym.Unit
Biol.Unit 1 (197 KB)
Header - Biol.Unit 1
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