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Asym. Unit
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Asym.Unit (443 KB)
Biol.Unit 1 (436 KB)
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(1)
Title
:
RAT LDHA IN COMPLEX WITH N-(2-(METHYLAMINO)-1,3-BENZOTHIAZOL-6-YL) ACETAMIDE
Authors
:
J. A. Tucker, C. Brassington, G. Hassall, M. Vogtherr, R. Ward, J. Tart, R. Greenwood
Date
:
16 Feb 12 (Deposition) - 21 Mar 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase-Inhibitor Complex, Fragment Based Lead Generated Inhibitors
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Ward, C. Brassington, A. L. Breeze, A. Caputo, S. Critchlow, G. Davies, L. Goodwin, G. Hassall, R. Greenwood, G. Holdgate, M. Mrosek, R. A. Norman, S. Pearson, J. Tart, J. A. Tucker, M. Vogtherr, D. Whittaker, J. Wingfield, J. Winter, K. Hudson
The Design And Synthesis Of Novel Lactate Dehydrogenase A Inhibitors By Fragment-Based Lead Generation
J. Med. Chem. V. 55 3285 2012
[
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: N-(2-METHYL-1,3-BENZOTHIAZOL-6-YL)... (88Sa)
1b: N-(2-METHYL-1,3-BENZOTHIAZOL-6-YL)... (88Sb)
1c: N-(2-METHYL-1,3-BENZOTHIAZOL-6-YL)... (88Sc)
1d: N-(2-METHYL-1,3-BENZOTHIAZOL-6-YL)... (88Sd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: MALONATE ION (MLIa)
3b: MALONATE ION (MLIb)
3c: MALONATE ION (MLIc)
3d: MALONATE ION (MLId)
3e: MALONATE ION (MLIe)
3f: MALONATE ION (MLIf)
3g: MALONATE ION (MLIg)
3h: MALONATE ION (MLIh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
88S
4
Ligand/Ion
N-(2-METHYL-1,3-BENZOTHIAZOL-6-YL)-3-UREIDO-PROPANAMIDE
2
GOL
3
Ligand/Ion
GLYCEROL
3
MLI
8
Ligand/Ion
MALONATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:40 , MET B:40 , ASP B:42 , PHE B:70 , LEU B:71 , HOH B:2081
BINDING SITE FOR RESIDUE GOL B1332
02
AC2
SOFTWARE
LYS C:41 , MET D:40 , ASP D:42 , PHE D:70 , LEU D:71 , LYS D:72 , HOH D:2064
BINDING SITE FOR RESIDUE GOL D1332
03
AC3
SOFTWARE
ASN C:107 , HOH C:2121 , HOH C:2254
BINDING SITE FOR RESIDUE GOL C1332
04
AC4
SOFTWARE
GLY A:28 , ASP A:51 , VAL A:52 , THR A:94 , ALA A:95 , GLY A:96 , ARG A:98 , PHE A:118 , HOH A:2029 , HOH A:2032 , HOH A:2126
BINDING SITE FOR RESIDUE 88S A1332
05
AC5
SOFTWARE
GLY B:28 , ASP B:51 , VAL B:52 , THR B:94 , ALA B:95 , GLY B:96 , ARG B:98 , PHE B:118 , ILE B:119 , HOH B:2026 , HOH B:2031 , HOH B:2100 , HOH B:2109 , HOH B:2110
BINDING SITE FOR RESIDUE 88S B1333
06
AC6
SOFTWARE
GLY C:28 , ASP C:51 , VAL C:52 , THR C:94 , ALA C:95 , GLY C:96 , PHE C:118 , ILE C:119 , HOH C:2024 , HOH C:2027 , HOH C:2092 , HOH C:2100
BINDING SITE FOR RESIDUE 88S C1333
07
AC7
SOFTWARE
GLY D:28 , ASP D:51 , VAL D:52 , THR D:94 , ALA D:95 , GLY D:96 , PHE D:118 , HOH D:2023 , HOH D:2025 , HOH D:2075
BINDING SITE FOR RESIDUE 88S D1333
08
AC8
SOFTWARE
GLN C:99 , ARG C:105 , ASN C:137 , LEU C:164 , ARG C:168 , HIS C:192 , THR C:247 , HOH C:2110
BINDING SITE FOR RESIDUE MLI C1334
09
AC9
SOFTWARE
ARG A:105 , ASN A:137 , LEU A:164 , ARG A:168 , HIS A:192 , ALA A:237 , THR A:247
BINDING SITE FOR RESIDUE MLI A1333
10
BC1
SOFTWARE
ARG B:170 , HIS B:185 , VAL B:269 , HOH B:2212 , HOH B:2215 , HOH B:2287 , HOH B:2329 , HOH B:2330 , SER C:183 , HIS C:185
BINDING SITE FOR RESIDUE MLI B1334
11
BC2
SOFTWARE
GLN B:99 , ARG B:105 , ASN B:137 , LEU B:164 , ARG B:168 , HIS B:192 , ALA B:237 , THR B:247 , HOH B:2262
BINDING SITE FOR RESIDUE MLI B1335
12
BC3
SOFTWARE
ARG A:170 , HIS A:185 , TRP A:187 , VAL A:269 , HOH A:2226 , HOH A:2250 , HOH A:2324 , HOH A:2345 , HOH A:2346 , SER D:183 , HIS D:185
BINDING SITE FOR RESIDUE MLI A1334
13
BC4
SOFTWARE
SER B:183 , HIS B:185 , HOH B:2209 , HOH B:2210 , HOH B:2211 , ARG C:170 , HIS C:185 , VAL C:269 , HOH C:2164 , HOH C:2234
BINDING SITE FOR RESIDUE MLI C1335
14
BC5
SOFTWARE
ARG D:105 , ASN D:137 , LEU D:164 , ARG D:168 , HIS D:192 , ALA D:237 , THR D:247 , HOH D:2171
BINDING SITE FOR RESIDUE MLI D1334
15
BC6
SOFTWARE
SER A:183 , HIS A:185 , HOH A:2245 , HOH A:2246 , HOH A:2247 , ARG D:170 , HIS D:185 , VAL D:269 , HOH D:2133 , HOH D:2181
BINDING SITE FOR RESIDUE MLI D1335
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: L_LDH (A:189-195,B:189-195,C:189-195,D:18...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
L_LDH
PS00064
L-lactate dehydrogenase active site.
LDHA_RAT
190-196
4
A:189-195
B:189-195
C:189-195
D:189-195
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d4ajka2 (A:160-331)
1b: SCOP_d4ajkb2 (B:160-331)
1c: SCOP_d4ajkc2 (C:160-331)
1d: SCOP_d4ajkd2 (D:160-331)
2a: SCOP_d4ajka1 (A:1-159)
2b: SCOP_d4ajkb1 (B:2-159)
2c: SCOP_d4ajkc1 (C:1-159)
2d: SCOP_d4ajkd1 (D:1-159)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
automated matches
(30)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
1a
d4ajka2
A:160-331
1b
d4ajkb2
B:160-331
1c
d4ajkc2
C:160-331
1d
d4ajkd2
D:160-331
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
2a
d4ajka1
A:1-159
2b
d4ajkb1
B:2-159
2c
d4ajkc1
C:1-159
2d
d4ajkd1
D:1-159
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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