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4AJB
Asym. Unit
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Asym.Unit (83 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
3D STRUCTURE OF E. COLI ISOCITRATE DEHYDROGENASE K100M MUTANT IN COMPLEX WITH ISOCITRATE, MAGNESIUM(II) AND THIONADP
Authors
:
S. Goncalves, S. P. Miller, M. A. Carrondo, A. M. Dean, P. M. Matias
Date
:
16 Feb 12 (Deposition) - 31 Oct 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Oxidative Beta-Decarboxylation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Goncalves, S. P. Miller, M. A. Carrondo, A. M. Dean, P. M. Matias
Induced Fit And The Catalytic Mechanism Of Isocitrate Dehydrogenase.
Biochemistry V. 51 7098 2012
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: ISOCITRIC ACID (ICTa)
2a: MAGNESIUM ION (MGa)
3a: SULFATE ION (SO4a)
4a: 7-THIONICOTINAMIDE-ADENINE-DINUCLE... (TAPa)
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No.
Name
Count
Type
Full Name
1
ICT
1
Ligand/Ion
ISOCITRIC ACID
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
SO4
1
Ligand/Ion
SULFATE ION
4
TAP
1
Ligand/Ion
7-THIONICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:58 , LEU A:103 , THR A:105 , ARG A:292 , THR A:338 , HIS A:339 , GLY A:340 , THR A:341 , ALA A:342 , TYR A:345 , VAL A:351 , ASN A:352 , TYR A:391 , ASP A:392 , ARG A:395 , ICT A:502 , HOH A:2167 , HOH A:2169 , HOH A:2172 , HOH A:2182 , HOH A:2401 , HOH A:2411 , HOH A:2412 , HOH A:2483 , HOH A:2484 , HOH A:2485 , HOH A:2486 , HOH A:2487 , HOH A:2488 , HOH A:2489
BINDING SITE FOR RESIDUE TAP A 501
2
AC2
SOFTWARE
SER A:113 , ARG A:119 , ARG A:129 , ARG A:153 , TYR A:160 , LYS A:230 , ASN A:232 , ASP A:283 , ASP A:307 , TAP A:501 , MG A:503 , HOH A:2172 , HOH A:2182 , HOH A:2200 , HOH A:2393 , HOH A:2484
BINDING SITE FOR RESIDUE ICT A 502
3
AC3
SOFTWARE
ASP A:283 , ASP A:307 , ICT A:502 , HOH A:2199 , HOH A:2393
BINDING SITE FOR RESIDUE MG A 503
4
AC4
SOFTWARE
GLY A:108 , GLY A:109 , GLY A:110 , LYS A:235 , HOH A:2174
BINDING SITE FOR RESIDUE SO4 A 504
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IDH_IMDH (A:303-322)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IDH_IMDH
PS00470
Isocitrate and isopropylmalate dehydrogenases signature.
IDH_ECOLI
303-322
1
A:303-322
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Exons
(0, 0)
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4ajba_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Isocitrate/Isopropylmalate dehydrogenase-like
(143)
Superfamily
:
Isocitrate/Isopropylmalate dehydrogenase-like
(143)
Family
:
Dimeric isocitrate & isopropylmalate dehydrogenases
(102)
Protein domain
:
automated matches
(45)
Escherichia coli [TaxId: 562]
(5)
1a
d4ajba_
A:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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