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4AIE
Asym. Unit
Info
Asym.Unit (188 KB)
Biol.Unit 1 (181 KB)
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(1)
Title
:
STRUCTURE OF GLUCAN-1,6-ALPHA-GLUCOSIDASE FROM LACTOBACILLUS ACIDOPHILUS NCFM
Authors
:
F. Fredslund, J. C. Navarro Poulsen, L. Lo Leggio
Date
:
09 Feb 12 (Deposition) - 29 Aug 12 (Release) - 29 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Glycoside Hydrolase 13
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Moller, F. Fredslund, A. Majumder, H. Nakai, J. N. Poulsen, L. Lo Leggio, B. Svensson, M. Abou Hachem
Enzymology And Structure Of The Gh13_31 Glucan 1, 6-Alpha- Glucosidase That Confers Isomaltooligosaccharide Utilization In The Probiotic Lactobacillus Acidophilus Ncfm.
J. Bacteriol. V. 194 4249 2012
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
MES
3
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:41 , TYR A:330 , GLN A:451 , ASN A:498 , GLU A:499 , GLU A:500 , PRO A:529 , HOH A:2186 , HOH A:2455
BINDING SITE FOR RESIDUE MES A1539
02
AC2
SOFTWARE
ASP A:20 , ASN A:22 , ASP A:24 , ILE A:26 , ASP A:28 , HOH A:2030
BINDING SITE FOR RESIDUE CA A1540
03
AC3
SOFTWARE
LYS A:93 , GLY A:191 , ILE A:192 , ARG A:233 , ASP A:234 , ASP A:388 , GLU A:390
BINDING SITE FOR RESIDUE GOL A1541
04
AC4
SOFTWARE
ASP A:59 , TYR A:62 , HIS A:102 , PHE A:143 , ASP A:198 , ARG A:401 , HOH A:2215 , HOH A:2249 , HOH A:2334
BINDING SITE FOR RESIDUE GOL A1542
05
AC5
SOFTWARE
ASP A:66 , GLU A:68 , HIS A:107 , LYS A:108 , PRO A:130 , GLU A:133 , TYR A:150 , TYR A:157 , HOH A:2076 , HOH A:2078 , HOH A:2185
BINDING SITE FOR RESIDUE MES A1543
06
AC6
SOFTWARE
SER A:322 , ARG A:323 , ASN A:361 , HOH A:2341 , HOH A:2366
BINDING SITE FOR RESIDUE GOL A1544
07
AC7
SOFTWARE
ASP A:20 , GLY A:23 , GLY A:417 , PHE A:418 , SER A:419 , GLU A:420
BINDING SITE FOR RESIDUE GOL A1545
08
AC8
SOFTWARE
LYS A:117 , ASP A:129 , SER A:154 , GLN A:156 , PHE A:186 , HOH A:2211 , HOH A:2474
BINDING SITE FOR RESIDUE GOL A1546
09
AC9
SOFTWARE
SER A:34 , ARG A:35 , ASP A:37 , TYR A:38 , HOH A:2046 , HOH A:2475
BINDING SITE FOR RESIDUE MES A1547
10
BC1
SOFTWARE
LYS A:279 , ASP A:316 , GLU A:374 , ARG A:401 , GOL A:1549 , HOH A:2249
BINDING SITE FOR RESIDUE GOL A1548
11
BC2
SOFTWARE
PHE A:162 , VAL A:199 , GLU A:201 , LEU A:202 , ARG A:212 , TRP A:242 , GOL A:1548 , HOH A:2218 , HOH A:2226 , HOH A:2249
BINDING SITE FOR RESIDUE GOL A1549
12
BC3
SOFTWARE
ASP A:118 , ILE A:376 , TYR A:379 , ASN A:380 , HOH A:2374
BINDING SITE FOR RESIDUE GOL A1550
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4aiea2 (A:466-538)
2a: SCOP_d4aiea1 (A:2-465)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Lactobacillus acidophilus [TaxId: 272621]
(1)
1a
d4aiea2
A:466-538
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Lactobacillus acidophilus [TaxId: 272621]
(1)
2a
d4aiea1
A:2-465
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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