PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4AHJ
Asym. Unit
Info
Asym.Unit (27 KB)
Biol.Unit 1 (22 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
I46V - ANGIOGENIN MUTANTS AND AMYOTROPHIC LATERAL SCLEROSIS - A BIOCHEMICAL AND BIOLOGICAL ANALYSIS
Authors
:
N. Thiyagarajan, R. Ferguson, S. Saha, T. Pham, V. Subramanian, K. R. Ac
Date
:
06 Feb 12 (Deposition) - 10 Oct 12 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Amyotrophic, Lateral Sclerosis, Neovascularisation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Thiyagarajan, R. Ferguson, V. Subramanian, K. R. Acharya
Structural And Molecular Insights Into The Mechanism Of Action Of Human Angiogenin-Als Variants In Neurons.
Nat. Commun. V. 3 1121 2012
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: D(-)-TARTARIC ACID (TARa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TAR
1
Ligand/Ion
D(-)-TARTARIC ACID
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:65 , ILE A:71 , PHE A:100 , ARG A:101 , ARG A:122 , HOH A:2042 , HOH A:2043
BINDING SITE FOR RESIDUE TAR A1123
[
close Site info
]
SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_044147 (Q12L, chain A, )
02: VAR_073021 (Y14H, chain A, )
03: VAR_044148 (K17E, chain A, )
04: VAR_044149 (K17I, chain A, )
05: VAR_073022 (D22G, chain A, )
06: VAR_044150 (S28N, chain A, )
07: VAR_044151 (R31K, chain A, )
08: VAR_044152 (C39W, chain A, )
09: VAR_044153 (K40I, chain A, )
10: VAR_044154 (V46V, chain A, )
11: VAR_013148 (K60E, chain A, )
12: VAR_044155 (P112L, chain A, )
13: VAR_044156 (V113I, chain A, )
14: VAR_044157 (H114R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_044147
Q
36
L
ANGI_HUMAN
Disease (ALS9)
---
A
Q
12
L
02
UniProt
VAR_073021
Y
38
H
ANGI_HUMAN
Disease (ALS9)
---
A
Y
14
H
03
UniProt
VAR_044148
K
41
E
ANGI_HUMAN
Disease (ALS9)
---
A
K
17
E
04
UniProt
VAR_044149
K
41
I
ANGI_HUMAN
Disease (ALS9)
---
A
K
17
I
05
UniProt
VAR_073022
D
46
G
ANGI_HUMAN
Disease (ALS9)
---
A
D
22
G
06
UniProt
VAR_044150
S
52
N
ANGI_HUMAN
Disease (ALS9)
---
A
S
28
N
07
UniProt
VAR_044151
R
55
K
ANGI_HUMAN
Disease (ALS9)
---
A
R
31
K
08
UniProt
VAR_044152
C
63
W
ANGI_HUMAN
Disease (ALS9)
---
A
C
39
W
09
UniProt
VAR_044153
K
64
I
ANGI_HUMAN
Disease (ALS9)
---
A
K
40
I
10
UniProt
VAR_044154
I
70
V
ANGI_HUMAN
Unclassified
---
A
V
46
V
11
UniProt
VAR_013148
K
84
E
ANGI_HUMAN
Polymorphism
17560
A
K
60
E
12
UniProt
VAR_044155
P
136
L
ANGI_HUMAN
Disease (ALS9)
---
A
P
112
L
13
UniProt
VAR_044156
V
137
I
ANGI_HUMAN
Disease (ALS9)
---
A
V
113
I
14
UniProt
VAR_044157
H
138
R
ANGI_HUMAN
Disease (ALS9)
---
A
H
114
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (A:39-45)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
ANGI_HUMAN
63-69
1
A:39-45
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.3c (A:2-122)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2a/1.3c
2: Boundary 1.3c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000397990
2a
ENSE00002201651
chr14:
21156932-21157033
102
ANGI_HUMAN
-
0
0
-
-
1.3c
ENST00000397990
3c
ENSE00001758396
chr14:
21161706-21162338
633
ANGI_HUMAN
1-153
153
1
A:2-122
121
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4ahja_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
automated matches
(86)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d4ahja_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (27 KB)
Header - Asym.Unit
Biol.Unit 1 (22 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4AHJ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
