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4AFG
Asym. Unit
Info
Asym.Unit (401 KB)
Biol.Unit 1 (392 KB)
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(1)
Title
:
CAPITELLA TELETA ACHBP IN COMPLEX WITH VARENICLINE
Authors
:
M. Brams, C. Ulens, R. Spurny
Date
:
19 Jan 12 (Deposition) - 30 May 12 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Acetylcholine-Binding Protein, Nicotinic Receptor, Ion Channel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Billen, R. Spurny, M. Brams, R. Van Elk, S. Valera-Kummer, J. L. Yakel, T. Voets, D. Bertrand, A. B. Smit, C. Ulens
Molecular Actions Of Smoking Cessation Drugs At Alpha4Beta2 Nicotinic Receptors Defined In Crystal Structures Of A Homologous Binding Protein.
Proc. Natl. Acad. Sci. Usa V. 109 9173 2012
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4a: VARENICLINE (QMRa)
4b: VARENICLINE (QMRb)
4c: VARENICLINE (QMRc)
4d: VARENICLINE (QMRd)
4e: VARENICLINE (QMRe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
QMR
5
Ligand/Ion
VARENICLINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:152 , TRP A:153 , VAL A:154 , TYR A:194 , CYS A:197 , TYR A:201 , HOH A:2117 , HOH A:2118 , ILE B:118 , ILE B:128
BINDING SITE FOR RESIDUE QMR A1214
02
AC2
SOFTWARE
ILE A:118 , ILE A:128 , HOH A:2100 , HOH B:2105 , TRP E:153 , VAL E:154 , CYS E:197 , TYR E:201
BINDING SITE FOR RESIDUE QMR B1214
03
AC3
SOFTWARE
HOH C:2103 , HOH C:2104 , SER D:152 , TRP D:153 , CYS D:197 , TYR D:201 , ILE E:118 , ILE E:128
BINDING SITE FOR RESIDUE QMR C1214
04
AC4
SOFTWARE
TRP C:153 , CYS C:197 , TYR C:201 , HOH C:2076 , HOH C:2077 , ILE D:118 , ILE D:128
BINDING SITE FOR RESIDUE QMR D1214
05
AC5
SOFTWARE
TRP B:153 , CYS B:197 , TYR B:201 , HOH B:2078 , ILE C:118 , ILE C:128
BINDING SITE FOR RESIDUE QMR E1214
06
AC6
SOFTWARE
PHE A:120 , ASN A:122 , THR A:124 , HOH A:2103 , HOH A:2157 , GLU E:198
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 122 RESIDUES 677 TO 678
07
AC7
SOFTWARE
PHE B:120 , ASN B:122 , THR B:124 , ASP B:166 , ASP D:166 , ASP D:167 , HOH D:2087
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 122 RESIDUES 677 TO 680
08
AC8
SOFTWARE
GLU B:198 , HOH B:2102 , PHE C:120 , ASN C:122 , THR C:124 , GLU D:181 , HOH D:2093
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 122 RESIDUES 677 TO 679
09
AC9
SOFTWARE
GLU C:181 , LEU C:183 , GLU C:198 , ARG C:211 , HOH C:2090 , PHE D:120 , ASN D:122 , THR D:124 , HOH D:2072
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 122 RESIDUES 677 TO 680
10
BC1
SOFTWARE
GLU D:198 , PHE E:120 , ASN E:122 , THR E:124 , HOH E:2064 , HOH E:2113
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 122 RESIDUES 677 TO 678
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d4afga_ (A:)
1b: SCOP_d4afgb_ (B:)
1c: SCOP_d4afgc_ (C:)
1d: SCOP_d4afgd_ (D:)
1e: SCOP_d4afge_ (E:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nicotinic receptor ligand binding domain-like
(58)
Superfamily
:
Nicotinic receptor ligand binding domain-like
(58)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Capitella teleta [TaxId: 283909]
(3)
1a
d4afga_
A:
1b
d4afgb_
B:
1c
d4afgc_
C:
1d
d4afgd_
D:
1e
d4afge_
E:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain E
Asymmetric Unit 1
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