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Getting 'Exon' information from database.
4AE9
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (61 KB)
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(1)
Title
:
STRUCTURE AND FUNCTION OF THE HUMAN SPERM-SPECIFIC ISOFORM OF PROTEIN KINASE A (PKA) CATALYTIC SUBUNIT C ALPHA 2
Authors
:
T. H. Hereng, P. H. Backe, J. Kahmann, C. Scheich, M. Bjoras, B. S. Skalhe K. R. Rosendal
Date
:
09 Jan 12 (Deposition) - 18 Apr 12 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. H. Hereng, P. H. Backe, J. Kahmann, C. Scheich, M. Bjoras, B. S. Skalhegg, K. R. Rosendal
Structure And Function Of The Human Sperm-Specific Isoform Of Protein Kinase A (Pka) Catalytic Subunit Calpha2
J. Struct. Biol. V. 178 300 2012
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: PHOSPHOSERINE (SEPa)
1b: PHOSPHOSERINE (SEPb)
1c: PHOSPHOSERINE (SEPc)
1d: PHOSPHOSERINE (SEPd)
2a: PHOSPHOTHREONINE (TPOa)
2b: PHOSPHOTHREONINE (TPOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SEP
4
Mod. Amino Acid
PHOSPHOSERINE
2
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040591 (L40V, chain A/B, )
2: VAR_040592 (R45Q, chain A/B, )
3: VAR_071707 (L205R, chain A/B, )
4: VAR_040593 (S263C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040591
L
41
V
KAPCA_HUMAN
Polymorphism
56029020
A/B
L
40
V
2
UniProt
VAR_040592
R
46
Q
KAPCA_HUMAN
Polymorphism
56085217
A/B
R
45
Q
3
UniProt
VAR_071707
L
206
R
KAPCA_HUMAN
Disease (PPNAD4)
---
A/B
L
205
R
4
UniProt
VAR_040593
S
264
C
KAPCA_HUMAN
Polymorphism
35635531
A/B
S
263
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:49-72,B:49-72)
2: PROTEIN_KINASE_ST (A:162-174,B:162-174)
3: AGC_KINASE_CTER (A:298-350,B:298-350)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
KAPCA_HUMAN
50-73
2
A:49-72
B:49-72
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
KAPCA_HUMAN
163-175
2
A:162-174
B:162-174
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
KAPCA_HUMAN
299-351
2
A:298-350
B:298-350
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Exons
(10, 20)
Info
All Exons
Exon 1.1 (A:12-15 | B:15-15)
Exon 1.3 (A:15-35 | B:15-35)
Exon 1.4 (A:36-78 | B:36-78)
Exon 1.5 (A:79-111 | B:79-111)
Exon 1.6 (A:112-139 | B:112-139)
Exon 1.7 (A:139-181 | B:139-181)
Exon 1.8 (A:182-213 | B:182-213)
Exon 1.9 (A:214-254 | B:214-254)
Exon 1.10 (A:255-309 | B:255-309)
Exon 1.11 (A:310-350 (gaps) | B:310-350 (gaps...)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000308677
1
ENSE00001361389
chr19:
14228559-14228314
246
KAPCA_HUMAN
1-16
16
2
A:12-15
B:15-15
4
1
1.3
ENST00000308677
3
ENSE00001606666
chr19:
14218221-14218160
62
KAPCA_HUMAN
16-36
21
2
A:15-35
B:15-35
21
21
1.4
ENST00000308677
4
ENSE00000685588
chr19:
14217700-14217572
129
KAPCA_HUMAN
37-79
43
2
A:36-78
B:36-78
43
43
1.5
ENST00000308677
5
ENSE00000685583
chr19:
14213726-14213628
99
KAPCA_HUMAN
80-112
33
2
A:79-111
B:79-111
33
33
1.6
ENST00000308677
6
ENSE00000685579
chr19:
14211720-14211638
83
KAPCA_HUMAN
113-140
28
2
A:112-139
B:112-139
28
28
1.7
ENST00000308677
7
ENSE00001738203
chr19:
14208702-14208576
127
KAPCA_HUMAN
140-182
43
2
A:139-181
B:139-181
43
43
1.8
ENST00000308677
8
ENSE00000685568
chr19:
14208486-14208391
96
KAPCA_HUMAN
183-214
32
2
A:182-213
B:182-213
32
32
1.9
ENST00000308677
9
ENSE00001592644
chr19:
14208295-14208173
123
KAPCA_HUMAN
215-255
41
2
A:214-254
B:214-254
41
41
1.10
ENST00000308677
10
ENSE00001737778
chr19:
14204604-14204440
165
KAPCA_HUMAN
256-310
55
2
A:255-309
B:255-309
55
55
1.11
ENST00000308677
11
ENSE00001143837
chr19:
14204049-14202509
1541
KAPCA_HUMAN
311-351
41
2
A:310-350 (gaps)
B:310-350 (gaps)
41
41
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4ae9a_ (A:)
1b: SCOP_d4ae9b_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d4ae9a_
A:
1b
d4ae9b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Nucleic
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (122 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
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