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4ADX
Asym. Unit
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Asym.Unit (171 KB)
Biol.Unit 1 (163 KB)
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Title
:
THE CRYO-EM STRUCTURE OF THE ARCHAEAL 50S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6
Authors
:
B. J. Greber, D. Boehringer, V. Godinic-Mikulcic, A. Crnkovic, M. Ibba I. Weygand-Durasevic, N. Ban
Date
:
04 Jan 12 (Deposition) - 08 Feb 12 (Release) - 20 Mar 13 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
6.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1,2,3,4,5,6,7,8,9
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1,2,3,4,5,6,7,8,9 (1x)
Keywords
:
Ribosome, Protein Synthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Greber, D. Boehringer, V. Godinic-Mikulcic, A. Crnkovic, M. Ibba, I. Weygand-Durasevic, N. Ban
Cryo-Em Structure Of The Archaeal 50S Ribosomal Subunit In Complex With Initiation Factor 6 And Implications For Ribosome Evolution
J. Mol. Biol. V. 418 145 2012
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Hetero Components
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RL6_HALMA_001 (R2S, chain E, )
2: VAR_RL6_HALMA_002 (E23S, chain E, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RL6_HALMA_001
*
R
3
S
RL6_HALMA
---
---
E
R
2
S
2
UniProt
VAR_RL6_HALMA_002
*
E
24
S
RL6_HALMA
---
---
E
E
23
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(26, 26)
Info
All PROSITE Patterns/Profiles
01: RIBOSOMAL_L37E (1:4-23)
02: RIBOSOMAL_L19E (P:6-25)
03: RIBOSOMAL_L24E (U:8-25)
04: RIBOSOMAL_L34E (4:15-28)
05: RIBOSOMAL_L30 (W:20-52)
06: RIBOSOMAL_L39E (2:28-44)
07: RIBOSOMAL_L18E (O:31-48)
08: RIBOSOMAL_L21E (Q:36-61)
09: RIBOSOMAL_L5 (D:41-57)
10: RIBOSOMAL_L29 (V:42-56)
11: RIBOSOMAL_L24 (T:45-62)
12: RIBOSOMAL_L15E (M:47-70)
13: RIBOSOMAL_L31E (X:48-62)
14: RIBOSOMAL_L44E (3:60-71)
15: RIBOSOMAL_L23 (S:62-77)
16: RIBOSOMAL_L7AE (F:67-84)
17: RIBOSOMAL_L14 (K:71-97)
18: RIBOSOMAL_L30E_2 (6:76-96)
19: RIBOSOMAL_L1E (C:103-129)
20: RIBOSOMAL_L15 (L:107-137)
21: RIBOSOMAL_L10E (H:114-130)
22: RIBOSOMAL_L22 (R:123-147)
23: RIBOSOMAL_L32E (Y:128-148)
24: RIBOSOMAL_L6_2 (E:150-171)
25: RIBOSOMAL_L2 (A:187-198)
26: RIBOSOMAL_L3 (B:194-217)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L37E
PS01077
Ribosomal protein L37e signature.
RL37_HALMA
5-24
1
1:4-23
2
RIBOSOMAL_L19E
PS00526
Ribosomal protein L19e signature.
RL19E_HALMA
7-26
1
P:6-25
3
RIBOSOMAL_L24E
PS01073
Ribosomal protein L24e signature.
RL24E_HALMA
9-26
1
U:8-25
4
RIBOSOMAL_L34E
PS01145
Ribosomal protein L34e signature.
RL34_TETTS
15-28
1
4:15-28
5
RIBOSOMAL_L30
PS00634
Ribosomal protein L30 signature.
RL30_HALMA
20-52
1
W:20-52
6
RIBOSOMAL_L39E
PS00051
Ribosomal protein L39e signature.
RL39_HALMA
29-45
1
2:28-44
7
RIBOSOMAL_L18E
PS01106
Ribosomal protein L18e signature.
RL18E_HALMA
32-49
1
O:31-48
8
RIBOSOMAL_L21E
PS01171
Ribosomal protein L21e signature.
RL21_HALMA
37-62
1
Q:36-61
9
RIBOSOMAL_L5
PS00358
Ribosomal protein L5 signature.
RL5_HALMA
42-58
1
D:41-57
10
RIBOSOMAL_L29
PS00579
Ribosomal protein L29 signature.
RL29_HALMA
43-57
1
V:42-56
11
RIBOSOMAL_L24
PS01108
Ribosomal protein L24 signature.
RL24_HALMA
46-63
1
T:45-62
12
RIBOSOMAL_L15E
PS01194
Ribosomal protein L15e signature.
RL15E_HALMA
48-71
1
M:47-70
13
RIBOSOMAL_L31E
PS01144
Ribosomal protein L31e signature.
RL31_HALMA
49-63
1
X:48-62
14
RIBOSOMAL_L44E
PS01172
Ribosomal protein L44e signature.
RL44E_HALMA
60-71
1
3:60-71
15
RIBOSOMAL_L23
PS00050
Ribosomal protein L23 signature.
RL23_HALMA
63-78
1
S:62-77
16
RIBOSOMAL_L7AE
PS01082
Ribosomal protein L7Ae signature.
RL7A_HALMA
68-85
1
F:67-84
17
RIBOSOMAL_L14
PS00049
Ribosomal protein L14 signature.
RL14_HALMA
71-97
1
K:71-97
18
RIBOSOMAL_L30E_2
PS00993
Ribosomal protein L30e signature 2.
RL30_TETTS
76-96
1
6:76-96
19
RIBOSOMAL_L1E
PS00939
Ribosomal protein L1e signature.
RL4_HALMA
103-129
1
C:103-129
20
RIBOSOMAL_L15
PS00475
Ribosomal protein L15 signature.
RL15_HALMA
108-138
1
L:107-137
21
RIBOSOMAL_L10E
PS01257
Ribosomal protein L10e signature.
RL10E_HALMA
109-130
1
H:114-130
22
RIBOSOMAL_L22
PS00464
Ribosomal protein L22 signature.
RL22_HALMA
124-148
1
R:123-147
23
RIBOSOMAL_L32E
PS00580
Ribosomal protein L32e signature.
RL32_HALMA
129-149
1
Y:128-148
24
RIBOSOMAL_L6_2
PS00700
Ribosomal protein L6 signature 2.
RL6_HALMA
151-172
1
E:150-171
25
RIBOSOMAL_L2
PS00467
Ribosomal protein L2 signature.
RL2_HALMA
188-199
1
A:187-198
26
RIBOSOMAL_L3
PS00474
Ribosomal protein L3 signature.
RL3_HALMA
195-218
1
B:194-217
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Asym.Unit (171 KB)
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