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Asym. Unit
Info
Asym.Unit (270 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (133 KB)
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(1)
Title
:
STRUCTURAL AND FUNCTIONAL STUDY OF SUCCINYL-ORNITHINE TRANSAMINASE FROM E. COLI
Authors
:
J. Newman, T. S. Peat
Date
:
23 Dec 11 (Deposition) - 16 Jan 13 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Plp Enzymes, Aminotransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Newman, S. Seabrook, R. Surjadi, C. C. Williams, D. Lucent, M. Wilding, C. Scott, T. S. Peat
Determination Of The Structure Of The Catabolic N- Succinylornithine Transaminase (Astc) From Escherichia Coli
Plos One V. 8 58298 2013
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
3c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
3d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
2
NA
4
Ligand/Ion
SODIUM ION
3
PLP
4
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:104 , GLY A:105 , ALA A:106 , PHE A:138 , HIS A:139 , GLU A:190 , ASP A:223 , VAL A:225 , GLN A:226 , LYS A:252 , HOH A:2128 , HOH A:2166 , HOH A:2168 , HOH A:2217 , HOH A:2218 , HOH A:2219 , THR B:281
BINDING SITE FOR RESIDUE PLP A1404
02
AC2
SOFTWARE
HOH A:2110 , HOH A:2111 , HOH A:2220 , HOH A:2221 , HOH A:2222 , HOH A:2223 , LYS C:118
BINDING SITE FOR RESIDUE MG A1999
03
AC3
SOFTWARE
THR A:281 , HOH A:2101 , HOH A:2102 , HOH A:2176 , HOH A:2178 , SER B:104 , GLY B:105 , ALA B:106 , PHE B:138 , HIS B:139 , GLU B:190 , ASP B:223 , VAL B:225 , GLN B:226 , LYS B:252 , HOH B:2096 , HOH B:2181
BINDING SITE FOR RESIDUE PLP B1404
04
AC4
SOFTWARE
ILE B:91 , THR B:94 , PHE B:95 , ALA B:96 , HOH B:2062 , HOH B:2064
BINDING SITE FOR RESIDUE NA B1405
05
AC5
SOFTWARE
HOH A:2137 , HOH A:2138 , LYS B:118 , HOH B:2073
BINDING SITE FOR RESIDUE MG B1999
06
AC6
SOFTWARE
SER C:104 , GLY C:105 , ALA C:106 , PHE C:138 , HIS C:139 , GLU C:190 , ASP C:223 , VAL C:225 , GLN C:226 , LYS C:252 , HOH C:2094 , HOH C:2123 , HOH C:2153 , HOH C:2154 , HOH C:2155 , THR D:281
BINDING SITE FOR RESIDUE PLP C1404
07
AC7
SOFTWARE
THR C:281 , HOH C:2073 , HOH C:2130 , SER D:104 , GLY D:105 , ALA D:106 , PHE D:138 , HIS D:139 , GLU D:190 , ASP D:223 , VAL D:225 , GLN D:226 , LYS D:252 , HOH D:2051 , HOH D:2085
BINDING SITE FOR RESIDUE PLP D1404
08
AC8
SOFTWARE
ILE C:91 , THR C:94 , ALA C:96 , HOH C:2063 , HOH C:2065
BINDING SITE FOR RESIDUE NA C1405
09
AC9
SOFTWARE
ILE A:91 , THR A:94 , ALA A:96 , HOH A:2090 , HOH A:2093
BINDING SITE FOR RESIDUE NA A1405
10
BC1
SOFTWARE
ILE D:91 , THR D:94 , PHE D:95 , ALA D:96
BINDING SITE FOR RESIDUE NA D1405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_3 (A:220-257,B:220-257,C:220-257,D:22...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
ASTC_ECOLI
220-257
4
A:220-257
B:220-257
C:220-257
D:220-257
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4adba_ (A:)
1b: SCOP_d4adbb_ (B:)
1c: SCOP_d4adbc_ (C:)
1d: SCOP_d4adbd_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Escherichia coli [TaxId: 511693]
(4)
1a
d4adba_
A:
1b
d4adbb_
B:
1c
d4adbc_
C:
1d
d4adbd_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (270 KB)
Header - Asym.Unit
Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
Biol.Unit 2 (133 KB)
Header - Biol.Unit 2
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