PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4ACF
Asym. Unit
Info
Asym.Unit (509 KB)
Biol.Unit 1 (984 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS GLUTAMINE SYNTHETASE IN COMPLEX WITH IMIDAZOPYRIDINE INHIBITOR ((4-(6-BROMO-3-(BUTYLAMINO)IMIDAZO(1,2-A)PYRIDIN-2-YL)PHENOXY) ACETIC ACID) AND L-METHIONINE-S-SULFOXIMINE PHOSPHATE.
Authors
:
M. T. Nilsson, S. L. Mowbray
Date
:
15 Dec 11 (Deposition) - 24 Oct 12 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (2x)
Keywords
:
Ligase, Nucleotide-Binding, Synthetase, Tri-Substituted Imidazole, Taut State, Rv2220, Mt2278, Glna1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Nordqvist, M. T. Nilsson, O. Lagerlund, D. Muthas, J. Gising, S. Yahiaoui, L. R. Odell, B. R. Srinivasa, M. Larhed, S. L. Mowbray, A. Karlen
Synthesis, Biological Evaluation And X-Ray Crystallographic Studies Of Imidazo(1, 2-A)Pyridine-Based Mycobacterium Tuberculosis Glutamine Synthetase Inhibitors
Medchemcomm V. 3 620 2012
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 48)
Info
All Hetero Components
1a: {4-[6-BROMO-3-(BUTYLAMINO)IMIDAZO[... (46Ba)
1b: {4-[6-BROMO-3-(BUTYLAMINO)IMIDAZO[... (46Bb)
1c: {4-[6-BROMO-3-(BUTYLAMINO)IMIDAZO[... (46Bc)
1d: {4-[6-BROMO-3-(BUTYLAMINO)IMIDAZO[... (46Bd)
1e: {4-[6-BROMO-3-(BUTYLAMINO)IMIDAZO[... (46Be)
1f: {4-[6-BROMO-3-(BUTYLAMINO)IMIDAZO[... (46Bf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
3o: MAGNESIUM ION (MGo)
3p: MAGNESIUM ION (MGp)
3q: MAGNESIUM ION (MGq)
3r: MAGNESIUM ION (MGr)
3s: MAGNESIUM ION (MGs)
3t: MAGNESIUM ION (MGt)
3u: MAGNESIUM ION (MGu)
3v: MAGNESIUM ION (MGv)
3w: MAGNESIUM ION (MGw)
3x: MAGNESIUM ION (MGx)
4a: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sa)
4b: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sb)
4c: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sc)
4d: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sd)
4e: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Se)
4f: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sf)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
5f: PHOSPHATE ION (PO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
46B
6
Ligand/Ion
{4-[6-BROMO-3-(BUTYLAMINO)IMIDAZO[1,2-A]PYRIDIN-2-YL]PHENOXY}ACETIC ACID
2
CL
6
Ligand/Ion
CHLORIDE ION
3
MG
24
Ligand/Ion
MAGNESIUM ION
4
P3S
6
Ligand/Ion
L-METHIONINE-S-SULFOXIMINE PHOSPHATE
5
PO4
6
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:129 , PHE A:232 , HIS A:278 , TRP A:282 , ASN A:359 , LYS A:361 , ARG A:364 , HOH A:2248
BINDING SITE FOR RESIDUE 46B A1479
02
AC2
SOFTWARE
GLU A:135 , GLU A:219 , GLU A:227 , P3S A:1483 , HOH A:2123
BINDING SITE FOR RESIDUE MG A1480
03
AC3
SOFTWARE
GLU A:133 , HIS A:276 , GLU A:366 , ARG A:368 , P3S A:1483 , PO4 A:1484
BINDING SITE FOR RESIDUE MG A1481
04
AC4
SOFTWARE
GLU A:133 , GLU A:227 , ASN A:229 , P3S A:1483 , PO4 A:1484 , HOH A:2124 , HOH A:2217
BINDING SITE FOR RESIDUE MG A1482
05
AC5
SOFTWARE
GLU A:133 , GLU A:135 , GLU A:219 , GLU A:227 , GLY A:272 , GLY A:274 , HIS A:276 , ARG A:329 , GLU A:335 , ARG A:347 , GLU A:366 , ARG A:368 , MG A:1480 , MG A:1481 , MG A:1482 , PO4 A:1484 , HOH A:2123 , HOH A:2182 , HOH A:2217 , HOH A:2220 , HOH A:2246 , ASP F:54
BINDING SITE FOR RESIDUE P3S A1483
06
AC6
SOFTWARE
GLU A:133 , HIS A:278 , ARG A:347 , ARG A:352 , GLU A:366 , MG A:1481 , MG A:1482 , P3S A:1483 , HOH A:2124 , HOH A:2217 , HOH A:2218 , HOH A:2300
BINDING SITE FOR RESIDUE PO4 A1484
07
AC7
SOFTWARE
SER A:424
BINDING SITE FOR RESIDUE CL A1485
08
AC8
SOFTWARE
HIS A:237 , HOH A:2067 , HOH A:2068 , HOH A:2224 , HOH A:2225 , HOH A:2349
BINDING SITE FOR RESIDUE MG A1486
09
AC9
SOFTWARE
TYR B:129 , GLY B:131 , PHE B:232 , HIS B:278 , TRP B:282 , ASN B:359 , LYS B:361 , ARG B:364 , HOH B:2229 , LYS E:14
BINDING SITE FOR RESIDUE 46B B1479
10
BC1
SOFTWARE
GLU B:135 , GLU B:219 , GLU B:227 , P3S B:1483 , HOH B:2122
BINDING SITE FOR RESIDUE MG B1480
11
BC2
SOFTWARE
GLU B:133 , HIS B:276 , GLU B:366 , P3S B:1483 , PO4 B:1484
BINDING SITE FOR RESIDUE MG B1481
12
BC3
SOFTWARE
GLU B:133 , GLU B:227 , P3S B:1483 , PO4 B:1484 , HOH B:2121 , HOH B:2200
BINDING SITE FOR RESIDUE MG B1482
13
BC4
SOFTWARE
ASP A:54 , GLU B:133 , GLU B:135 , GLU B:219 , GLU B:227 , GLY B:272 , HIS B:276 , ARG B:329 , GLU B:335 , ARG B:347 , GLU B:366 , ARG B:368 , MG B:1480 , MG B:1481 , MG B:1482 , PO4 B:1484 , HOH B:2122 , HOH B:2174 , HOH B:2200 , HOH B:2201 , HOH B:2227
BINDING SITE FOR RESIDUE P3S B1483
14
BC5
SOFTWARE
GLU B:133 , HIS B:278 , ARG B:347 , ARG B:352 , GLU B:366 , MG B:1481 , MG B:1482 , P3S B:1483 , HOH B:2121 , HOH B:2199 , HOH B:2200 , HOH B:2277
BINDING SITE FOR RESIDUE PO4 B1484
15
BC6
SOFTWARE
SER B:424 , HOH B:2320
BINDING SITE FOR RESIDUE CL B1485
16
BC7
SOFTWARE
GLU B:76 , HIS B:237 , HOH B:2065 , HOH B:2066 , HOH B:2205 , HOH B:2206 , HOH B:2325
BINDING SITE FOR RESIDUE MG B1486
17
BC8
SOFTWARE
TYR C:129 , PHE C:232 , HIS C:278 , TRP C:282 , ASN C:359 , LYS C:361 , ARG C:364
BINDING SITE FOR RESIDUE 46B C1479
18
BC9
SOFTWARE
GLU C:135 , GLU C:219 , GLU C:227 , P3S C:1483 , HOH C:2119
BINDING SITE FOR RESIDUE MG C1480
19
CC1
SOFTWARE
GLU C:133 , HIS C:276 , GLU C:366 , ARG C:368 , P3S C:1483 , PO4 C:1484
BINDING SITE FOR RESIDUE MG C1481
20
CC2
SOFTWARE
GLU C:133 , GLU C:227 , P3S C:1483 , PO4 C:1484 , HOH C:2118 , HOH C:2195
BINDING SITE FOR RESIDUE MG C1482
21
CC3
SOFTWARE
ASP B:54 , GLU C:133 , GLU C:135 , GLU C:219 , GLU C:227 , GLY C:272 , HIS C:276 , ARG C:329 , TYR C:334 , GLU C:335 , ARG C:347 , GLU C:366 , ARG C:368 , MG C:1480 , MG C:1481 , MG C:1482 , PO4 C:1484 , HOH C:2119 , HOH C:2171 , HOH C:2195 , HOH C:2196 , HOH C:2223
BINDING SITE FOR RESIDUE P3S C1483
22
CC4
SOFTWARE
GLU C:133 , HIS C:278 , ARG C:347 , ARG C:352 , GLU C:366 , MG C:1481 , MG C:1482 , P3S C:1483 , HOH C:2118 , HOH C:2194 , HOH C:2195 , HOH C:2273
BINDING SITE FOR RESIDUE PO4 C1484
23
CC5
SOFTWARE
LEU C:423 , SER C:424
BINDING SITE FOR RESIDUE CL C1485
24
CC6
SOFTWARE
GLU C:76 , HIS C:237 , HOH C:2064 , HOH C:2065 , HOH C:2200 , HOH C:2201 , HOH C:2320
BINDING SITE FOR RESIDUE MG C1486
25
CC7
SOFTWARE
TYR D:129 , PHE D:232 , HIS D:278 , TRP D:282 , ASN D:359 , LYS D:361 , ARG D:364 , HOH D:2223
BINDING SITE FOR RESIDUE 46B D1479
26
CC8
SOFTWARE
GLU D:135 , GLU D:219 , GLU D:227 , MG D:1482 , P3S D:1483 , HOH D:2114
BINDING SITE FOR RESIDUE MG D1480
27
CC9
SOFTWARE
GLU D:133 , HIS D:276 , GLU D:366 , ARG D:368 , P3S D:1483 , PO4 D:1484
BINDING SITE FOR RESIDUE MG D1481
28
DC1
SOFTWARE
GLU D:133 , GLU D:227 , MG D:1480 , P3S D:1483 , PO4 D:1484 , HOH D:2115 , HOH D:2193
BINDING SITE FOR RESIDUE MG D1482
29
DC2
SOFTWARE
ASP C:54 , GLU D:133 , GLU D:135 , GLU D:219 , GLU D:227 , GLY D:272 , HIS D:276 , ARG D:329 , GLU D:335 , ARG D:347 , GLU D:366 , ARG D:368 , MG D:1480 , MG D:1481 , MG D:1482 , PO4 D:1484 , HOH D:2114 , HOH D:2167 , HOH D:2193 , HOH D:2194 , HOH D:2222
BINDING SITE FOR RESIDUE P3S D1483
30
DC3
SOFTWARE
GLU D:133 , HIS D:278 , ARG D:347 , ARG D:352 , GLU D:366 , MG D:1481 , MG D:1482 , P3S D:1483 , HOH D:2115 , HOH D:2193 , HOH D:2270
BINDING SITE FOR RESIDUE PO4 D1484
31
DC4
SOFTWARE
SER D:424
BINDING SITE FOR RESIDUE CL D1485
32
DC5
SOFTWARE
GLU D:76 , HIS D:237 , HOH D:2061 , HOH D:2062 , HOH D:2198 , HOH D:2199 , HOH D:2318
BINDING SITE FOR RESIDUE MG D1486
33
DC6
SOFTWARE
TYR E:129 , PHE E:232 , HIS E:278 , TRP E:282 , ASN E:359 , LYS E:361 , ARG E:364 , HOH E:2224
BINDING SITE FOR RESIDUE 46B E1479
34
DC7
SOFTWARE
GLU E:135 , GLU E:219 , GLU E:227 , MG E:1482 , P3S E:1483 , HOH E:2116
BINDING SITE FOR RESIDUE MG E1480
35
DC8
SOFTWARE
GLU E:133 , HIS E:276 , GLU E:366 , ARG E:368 , P3S E:1483 , PO4 E:1484
BINDING SITE FOR RESIDUE MG E1481
36
DC9
SOFTWARE
GLU E:133 , GLU E:227 , MG E:1480 , P3S E:1483 , PO4 E:1484 , HOH E:2115 , HOH E:2194
BINDING SITE FOR RESIDUE MG E1482
37
EC1
SOFTWARE
ASP D:54 , GLU E:133 , GLU E:135 , GLU E:219 , GLU E:227 , GLY E:272 , HIS E:276 , ARG E:329 , TYR E:334 , GLU E:335 , ARG E:347 , GLU E:366 , ARG E:368 , MG E:1480 , MG E:1481 , MG E:1482 , PO4 E:1484 , HOH E:2116 , HOH E:2169 , HOH E:2194 , HOH E:2196 , HOH E:2222
BINDING SITE FOR RESIDUE P3S E1483
38
EC2
SOFTWARE
GLU E:133 , HIS E:278 , ARG E:347 , ARG E:352 , GLU E:366 , MG E:1481 , MG E:1482 , P3S E:1483 , HOH E:2115 , HOH E:2194 , HOH E:2195 , HOH E:2272
BINDING SITE FOR RESIDUE PO4 E1484
39
EC3
SOFTWARE
SER E:424
BINDING SITE FOR RESIDUE CL E1485
40
EC4
SOFTWARE
GLU E:76 , HIS E:237 , HOH E:2064 , HOH E:2065 , HOH E:2200 , HOH E:2201 , HOH E:2320
BINDING SITE FOR RESIDUE MG E1486
41
EC5
SOFTWARE
TYR F:129 , PHE F:232 , HIS F:278 , TRP F:282 , ASN F:359 , LYS F:361 , ARG F:364 , HOH F:2199
BINDING SITE FOR RESIDUE 46B F1479
42
EC6
SOFTWARE
GLU F:135 , GLU F:219 , GLU F:227 , MG F:1482 , P3S F:1483 , HOH F:2095
BINDING SITE FOR RESIDUE MG F1480
43
EC7
SOFTWARE
GLU F:133 , HIS F:276 , GLU F:366 , P3S F:1483 , PO4 F:1484
BINDING SITE FOR RESIDUE MG F1481
44
EC8
SOFTWARE
GLU F:133 , GLU F:227 , MG F:1480 , P3S F:1483 , PO4 F:1484 , HOH F:2096 , HOH F:2171
BINDING SITE FOR RESIDUE MG F1482
45
EC9
SOFTWARE
ASP E:54 , GLU F:133 , GLU F:135 , GLU F:219 , GLU F:227 , GLY F:272 , GLY F:274 , HIS F:276 , ARG F:329 , GLU F:335 , ALA F:336 , ARG F:347 , GLU F:366 , ARG F:368 , MG F:1480 , MG F:1481 , MG F:1482 , PO4 F:1484 , HOH F:2095 , HOH F:2147 , HOH F:2171 , HOH F:2173 , HOH F:2197
BINDING SITE FOR RESIDUE P3S F1483
46
FC1
SOFTWARE
GLU F:133 , HIS F:278 , ARG F:347 , ARG F:352 , GLU F:366 , MG F:1481 , MG F:1482 , P3S F:1483 , HOH F:2096 , HOH F:2171 , HOH F:2172 , HOH F:2247
BINDING SITE FOR RESIDUE PO4 F1484
47
FC2
SOFTWARE
SER F:424
BINDING SITE FOR RESIDUE CL F1485
48
FC3
SOFTWARE
HIS F:237 , HOH F:2046 , HOH F:2047 , HOH F:2177 , HOH F:2178 , HOH F:2294
BINDING SITE FOR RESIDUE MG F1486
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 18)
Info
All PROSITE Patterns/Profiles
1: GLNA_1 (A:53-71,B:53-71,C:53-71,D:53-71,E:...)
2: GLNA_ATP (A:265-280,B:265-280,C:265-280,D:26...)
3: GLNA_ADENYLATION (A:394-406,B:394-406,C:394-406,D:39...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLNA_1
PS00180
Glutamine synthetase signature 1.
GLN1B_MYCTO
53-71
6
A:53-71
B:53-71
C:53-71
D:53-71
E:53-71
F:53-71
GLN1B_MYCTU
53-71
6
A:53-71
B:53-71
C:53-71
D:53-71
E:53-71
F:53-71
2
GLNA_ATP
PS00181
Glutamine synthetase putative ATP-binding region signature.
GLN1B_MYCTO
265-280
6
A:265-280
B:265-280
C:265-280
D:265-280
E:265-280
F:265-280
GLN1B_MYCTU
265-280
6
A:265-280
B:265-280
C:265-280
D:265-280
E:265-280
F:265-280
3
GLNA_ADENYLATION
PS00182
Glutamine synthetase class-I adenylation site.
GLN1B_MYCTO
394-406
6
A:394-406
B:394-406
C:394-406
D:394-406
E:394-406
F:394-406
GLN1B_MYCTU
394-406
6
A:394-406
B:394-406
C:394-406
D:394-406
E:394-406
F:394-406
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d4acfa1 (A:4-104)
1b: SCOP_d4acfb1 (B:4-104)
1c: SCOP_d4acfc1 (C:4-104)
1d: SCOP_d4acfd1 (D:4-104)
1e: SCOP_d4acfe1 (E:4-104)
1f: SCOP_d4acff1 (F:4-104)
2a: SCOP_d4acfa2 (A:105-478)
2b: SCOP_d4acfb2 (B:105-478)
2c: SCOP_d4acfc2 (C:105-478)
2d: SCOP_d4acfd2 (D:105-478)
2e: SCOP_d4acfe2 (E:105-478)
2f: SCOP_d4acff2 (F:105-478)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Mycobacterium tuberculosis [TaxId: 83332]
(6)
1a
d4acfa1
A:4-104
1b
d4acfb1
B:4-104
1c
d4acfc1
C:4-104
1d
d4acfd1
D:4-104
1e
d4acfe1
E:4-104
1f
d4acff1
F:4-104
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Mycobacterium tuberculosis [TaxId: 83332]
(6)
2a
d4acfa2
A:105-478
2b
d4acfb2
B:105-478
2c
d4acfc2
C:105-478
2d
d4acfd2
D:105-478
2e
d4acfe2
E:105-478
2f
d4acff2
F:105-478
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (509 KB)
Header - Asym.Unit
Biol.Unit 1 (984 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4ACF
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help