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4AC5
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (191 KB)
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(1)
Title
:
LIPIDIC SPONGE PHASE CRYSTAL STRUCTURE OF THE BL. VIRIDIS REACTION CENTRE SOLVED USING SERIAL FEMTOSECOND CRYSTALLOGRAPHY
Authors
:
L. C. Johansson, D. Arnlund, T. A. White, G. Katona, D. P. Deponte, U. Wei R. B. Doak, R. L. Shoeman, L. Lomb, E. Malmerberg, J. Davidsson, K. Nass J. Andreasson, A. Aquila, S. Bajt, M. Barthelmess, A. Barty, M. J. Boga C. Bostedt, J. D. Bozek, C. Caleman, R. Coffee, N. Coppola, T. Ekeberg, B. Erk, H. Fleckenstein, L. Foucar, H. Graafsma, L. Gumprecht, J. Hajd C. Y. Hampton, R. Hartmann, A. Hartmann, G. Hauser, H. Hirsemann, P. Ho M. S. Hunter, S. Kassemeyer, N. Kimmel, R. A. Kirian, F. R. N. C. Maia, S. Marchesini, A. V. Martin, C. Reich, D. Rolles, B. Rudek, A. Rudenko, I. Schlichting, J. Schulz, M. M. Seibert, R. Sierra, H. Soltau, D. Star F. Stellato, S. Stern, L. Struder, N. Timneanu, J. Ullrich, W. Y. Wahlg X. Wang, G. Weidenspointner, C. Wunderer, P. Fromme, H. N. Chapman, J. C. H. Spence, R. Neutze
Date
:
14 Dec 11 (Deposition) - 15 Feb 12 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
8.20
Chains
:
Asym. Unit : C,H,L,M
Biol. Unit 1: C,H,L,M (1x)
Keywords
:
Photosynthesis, Lipidic-Sponge Phase, Reaction Center, Electron Transport, Cell Membrane, Metal- Binding, Transmembrane, Formylation, Chromophore, Lipoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. C. Johansson, D. Arnlund, T. A. White, G. Katona, D. P. Deponte, U. Weierstall, R. B. Doak, R. L. Shoeman, L. Lomb, E. Malmerberg, J. Davidsson, K. Nass, M. Liang, J. Andreasson, A. Aquila, S. Bajt, M. Barthelmess, A. Barty, M. J. Bogan, C. Bostedt, J. D. Bozek, C. Caleman, R. Coffee, N. Coppola, T. Ekeberg, S. W. Epp, B. Erk, H. Fleckenstein, L. Foucar, H. Graafsma, L. Gumprecht, J. Hajdu, C. Y. Hampton, R. Hartmann, A. Hartmann, G. Hauser, H. Hirsemann, P. Holl, M. S. Hunter, S. Kassemeyer, N. Kimmel, R. A. Kirian, F. R. N. C. Maia, S. Marchesini, A. V. Martin, C. Reich, D. Rolles, B. Rudek, A. Rudenko, I. Schlichting, J. Schulz, M. M. Seibert, R. Sierra, H. Soltau, D. Starodub, F. Stellato, S. Stern, L. Struder N. Timneanu, J. Ullrich, W. Y. Wahlgren, X. Wang, G. Weidenspointner, C. Wunderer, P. Fromme, H. N. Chapman, J. C. H. Spence, R. Neutze
Lipidic Phase Membrane Protein Serial Femtosecond Crystallography.
Nat. Methods V. 9 263 2012
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Hetero Components
(7, 14)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL B (BCBa)
1b: BACTERIOCHLOROPHYLL B (BCBb)
1c: BACTERIOCHLOROPHYLL B (BCBc)
1d: BACTERIOCHLOROPHYLL B (BCBd)
2a: BACTERIOPHEOPHYTIN B (BPBa)
2b: BACTERIOPHEOPHYTIN B (BPBb)
3a: FE (II) ION (FE2a)
4a: N-FORMYLMETHIONINE (FMEa)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
5d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
6a: MENAQUINONE-7 (MQ7a)
7a: 15-CIS-1,2-DIHYDRONEUROSPORENE (NS5a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCB
4
Ligand/Ion
BACTERIOCHLOROPHYLL B
2
BPB
2
Ligand/Ion
BACTERIOPHEOPHYTIN B
3
FE2
1
Ligand/Ion
FE (II) ION
4
FME
1
Mod. Amino Acid
N-FORMYLMETHIONINE
5
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
MQ7
1
Ligand/Ion
MENAQUINONE-7
7
NS5
1
Ligand/Ion
15-CIS-1,2-DIHYDRONEUROSPORENE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR C:56 , LYS C:57 , ASN C:58 , VAL C:59 , LYS C:60 , VAL C:61 , LEU C:62 , PHE C:70 , MET C:74 , THR C:75 , ILE C:77 , THR C:78 , CYS C:87 , CYS C:90 , HIS C:91 , LEU C:96 , ALA C:97 , TYR C:104 , ALA C:107 , ARG C:108 , HEM C:1334
BINDING SITE FOR RESIDUE HEM C1333
02
AC2
SOFTWARE
TYR C:89 , TYR C:102 , PRO C:103 , MET C:110 , LEU C:111 , MET C:113 , THR C:114 , CYS C:132 , CYS C:135 , HIS C:136 , PRO C:140 , LEU C:141 , PRO C:142 , LEU C:289 , ARG C:293 , PRO C:301 , ALA C:303 , HEM C:1333
BINDING SITE FOR RESIDUE HEM C1334
03
AC3
SOFTWARE
VAL C:201 , ARG C:202 , VAL C:203 , VAL C:204 , PHE C:230 , MET C:233 , MET C:234 , ILE C:236 , SER C:237 , LEU C:240 , ASN C:243 , CYS C:244 , CYS C:247 , HIS C:248 , PHE C:253 , GLU C:254 , ARG C:264 , ALA C:267 , TRP C:268 , ILE C:271 , ARG C:272 , HEM C:1336 , ILE M:189
BINDING SITE FOR RESIDUE HEM C1335
04
AC4
SOFTWARE
ILE C:117 , HIS C:124 , VAL C:125 , THR C:128 , LEU C:194 , PHE C:246 , GLN C:263 , ILE C:266 , ALA C:267 , GLY C:270 , ILE C:271 , MET C:273 , VAL C:274 , ASP C:304 , CYS C:305 , CYS C:308 , HIS C:309 , THR C:313 , LYS C:314 , PRO C:315 , HEM C:1335
BINDING SITE FOR RESIDUE HEM C1336
05
AC5
SOFTWARE
PHE L:97 , PRO L:124 , MET L:127 , VAL L:157 , ASN L:158 , PHE L:160 , TRP L:167 , HIS L:168 , HIS L:173 , SER L:176 , VAL L:177 , PHE L:241 , GLY L:244 , GLY L:247 , THR L:248 , BCB L:1275 , BPB L:1276 , TYR M:195 , BCB M:1324 , BCB M:1325
BINDING SITE FOR RESIDUE BCB L1274
06
AC6
SOFTWARE
PHE L:128 , HIS L:153 , LEU L:154 , BCB L:1274 , BPB L:1276 , TYR M:195 , GLY M:201 , ILE M:204 , GLY M:205 , LEU M:212 , BCB M:1325
BINDING SITE FOR RESIDUE BCB L1275
07
AC7
SOFTWARE
PHE L:41 , ILE L:42 , ALA L:96 , PHE L:97 , TRP L:100 , GLU L:104 , PHE L:121 , PRO L:124 , TYR L:148 , GLY L:149 , ILE L:150 , ALA L:237 , PHE L:241 , BCB L:1274 , BCB L:1275 , TYR M:208 , GLY M:211 , LEU M:212 , TRP M:250
BINDING SITE FOR RESIDUE BPB L1276
08
AC8
SOFTWARE
HIS L:168 , MET L:174 , VAL L:177 , SER L:178 , BCB L:1274 , MET M:120 , TRP M:178 , HIS M:180 , BCB M:1325 , BPB M:1326 , NS5 M:1329
BINDING SITE FOR RESIDUE BCB M1324
09
AC9
SOFTWARE
PHE L:181 , BCB L:1274 , BCB L:1275 , GLY M:62 , PHE M:154 , LEU M:184 , TYR M:195 , HIS M:200 , SER M:203 , ILE M:204 , TYR M:208 , MET M:275 , ALA M:278 , ILE M:282 , BCB M:1324 , BPB M:1326
BINDING SITE FOR RESIDUE BCB M1325
10
BC1
SOFTWARE
PHE L:181 , MET L:185 , LEU L:189 , ALA M:58 , SER M:63 , ILE M:66 , SER M:123 , LEU M:124 , TRP M:127 , VAL M:131 , ASN M:147 , PHE M:148 , SER M:271 , MET M:275 , BCB M:1324 , BCB M:1325
BINDING SITE FOR RESIDUE BPB M1326
11
BC2
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:217 , GLU M:232 , HIS M:264
BINDING SITE FOR RESIDUE FE2 M1327
12
BC3
SOFTWARE
TYR L:29 , ARG L:103 , HIS M:217 , THR M:220 , ALA M:246 , TRP M:250 , ALA M:258 , THR M:259 , VAL M:263 , TRP M:266
BINDING SITE FOR RESIDUE MQ7 M1328
13
BC4
SOFTWARE
GLY M:117 , MET M:120 , THR M:121 , PHE M:175 , GLY M:176 , BCB M:1324
BINDING SITE FOR RESIDUE NS5 M1329
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (C:82-314)
2: REACTION_CENTER (L:166-192,M:193-219)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
CYCR_BLAVI
102-334
1
C:82-314
2
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_BLAVI
167-193
1
L:166-192
RCEM_BLAVI
194-220
1
M:193-219
[
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Exons
(0, 0)
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CATH Domains
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