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4AAY
Biol. Unit 3
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (621 KB)
Biol.Unit 2 (624 KB)
Biol.Unit 3 (625 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ARSENITE OXIDASE PROTEIN COMPLEX FROM RHIZOBIUM SPECIES STRAIN NT-26
Authors
:
M. Oke, J. M. Santini, J. H. Naismith
Date
:
05 Dec 11 (Deposition) - 12 Dec 12 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: C,D,E,F (1x)
Biol. Unit 2: A,B,G,H (1x)
Biol. Unit 3: A,B,G,H (1x)
Keywords
:
Oxidoreductase, Rieske, Iron Sulfur, Molybdopterin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. P. Warelow, M. Oke, B. Schoepp-Cothenet, J. U. Dahl, N. Bruselat, G. N. Sivalingam, S. Leimkuhler, K. Thalassinos, U. Kappler, J. H. Naismith, J. M. Santini
The Respiratory Arsenite Oxidase: Structure And The Role Of Residues Surrounding The Rieske Cluster.
Plos One V. 8 72535 2013
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: MOLYBDENUM(IV) ION (4MOa)
1b: MOLYBDENUM(IV) ION (4MOb)
1c: MOLYBDENUM(IV) ION (4MOc)
1d: MOLYBDENUM(IV) ION (4MOd)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
2c: FE3-S4 CLUSTER (F3Sc)
2d: FE3-S4 CLUSTER (F3Sd)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
4a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
4b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
4c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
4d: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDd)
4e: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDe)
4f: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDf)
4g: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDg)
4h: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDh)
5a: OXYGEN ATOM (Oa)
5b: OXYGEN ATOM (Ob)
5c: OXYGEN ATOM (Oc)
5d: OXYGEN ATOM (Od)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4MO
1
Ligand/Ion
MOLYBDENUM(IV) ION
2
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
3
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
MGD
2
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
5
O
-1
Ligand/Ion
OXYGEN ATOM
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:174 , HIS A:199 , ASN A:200 , LYS A:413 , TRP A:417 , GLY A:486 , CYS A:487 , ASP A:488 , THR A:492 , VAL A:543 , ASP A:544 , ILE A:545 , ILE A:546 , THR A:548 , ALA A:560 , ALA A:561 , THR A:562 , ASP A:593 , ASN A:718 , ARG A:720 , GLN A:726 , SER A:727 , TYR A:729 , PHE A:792 , GLN A:799 , TYR A:815 , LYS A:816 , MGD A:2002 , O A:2003 , 4MO A:2004
BINDING SITE FOR RESIDUE MGD A2001
02
AC2
SOFTWARE
ARG A:104 , GLY A:236 , THR A:237 , ASN A:238 , GLU A:241 , THR A:242 , GLN A:243 , VAL A:280 , ASP A:281 , PRO A:282 , ARG A:283 , THR A:285 , GLY A:308 , ASP A:310 , GLU A:412 , LYS A:413 , GLY A:414 , GLY A:449 , GLY A:450 , HIS A:451 , ASN A:717 , GLY A:719 , ARG A:720 , ALA A:721 , ASN A:722 , VAL A:724 , TRP A:725 , GLN A:726 , LYS A:816 , GLN A:817 , MGD A:2001 , O A:2003 , 4MO A:2004
BINDING SITE FOR RESIDUE MGD A2002
03
AC3
SOFTWARE
ASN A:200 , GLU A:207 , LYS A:413 , MGD A:2001 , MGD A:2002 , 4MO A:2004
BINDING SITE FOR RESIDUE O A2003
04
AC4
SOFTWARE
LYS A:413 , ARG A:720 , MGD A:2001 , MGD A:2002 , O A:2003
BINDING SITE FOR RESIDUE 4MO A2004
05
AC5
SOFTWARE
CYS A:24 , CYS A:27 , GLY A:30 , CYS A:31 , TYR A:33 , SER A:102 , ARG A:104 , GLY A:105 , ASN A:245
BINDING SITE FOR RESIDUE F3S A2005
06
AC6
SOFTWARE
CYS B:103 , HIS B:105 , LYS B:106 , CYS B:121 , HIS B:124 , SER B:126
BINDING SITE FOR RESIDUE FES B2006
07
CC1
SOFTWARE
GLY G:174 , HIS G:199 , ASN G:200 , LYS G:413 , TRP G:417 , GLY G:486 , CYS G:487 , ASP G:488 , THR G:492 , VAL G:543 , ASP G:544 , ILE G:545 , THR G:548 , ALA G:560 , ALA G:561 , THR G:562 , ASP G:593 , ASN G:718 , ARG G:720 , GLN G:726 , SER G:727 , TYR G:729 , PHE G:792 , GLN G:799 , TYR G:815 , LYS G:816 , MGD G:2002 , O G:2003 , 4MO G:2004
BINDING SITE FOR RESIDUE MGD G2001
08
CC2
SOFTWARE
ARG G:104 , GLY G:236 , THR G:237 , ASN G:238 , GLU G:241 , THR G:242 , GLN G:243 , VAL G:280 , ASP G:281 , PRO G:282 , ARG G:283 , THR G:285 , GLY G:308 , ASP G:310 , GLU G:412 , LYS G:413 , GLY G:414 , GLY G:449 , GLY G:450 , HIS G:451 , ASN G:717 , GLY G:719 , ARG G:720 , ALA G:721 , ASN G:722 , VAL G:724 , TRP G:725 , GLN G:726 , LYS G:816 , GLN G:817 , MGD G:2001 , O G:2003 , 4MO G:2004
BINDING SITE FOR RESIDUE MGD G2002
09
CC3
SOFTWARE
ASN G:200 , LYS G:413 , MGD G:2001 , MGD G:2002 , 4MO G:2004
BINDING SITE FOR RESIDUE O G2003
10
CC4
SOFTWARE
LYS G:413 , ARG G:720 , MGD G:2001 , MGD G:2002 , O G:2003
BINDING SITE FOR RESIDUE 4MO G2004
11
CC5
SOFTWARE
CYS G:24 , CYS G:27 , GLY G:30 , CYS G:31 , TYR G:33 , SER G:102 , ARG G:104 , GLY G:105 , ASN G:245
BINDING SITE FOR RESIDUE F3S G2005
12
CC6
SOFTWARE
CYS H:103 , HIS H:105 , LYS H:106 , CYS H:121 , HIS H:124 , SER H:126
BINDING SITE FOR RESIDUE FES H2006
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4aayb_ (B:)
1b: SCOP_d4aayd_ (D:)
1c: SCOP_d4aayf_ (F:)
1d: SCOP_d4aayh_ (H:)
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Class
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All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
automated matches
(22)
Protein domain
:
automated matches
(22)
Arsenite-oxidising bacterium [TaxId: 97708]
(1)
1a
d4aayb_
B:
1b
d4aayd_
D:
1c
d4aayf_
F:
1d
d4aayh_
H:
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CATH Domains
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Pfam Domains
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Asym.Unit (1.2 MB)
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Biol.Unit 1 (621 KB)
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Biol.Unit 3 (625 KB)
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