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4AAY
Biol. Unit 1
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (621 KB)
Biol.Unit 2 (624 KB)
Biol.Unit 3 (625 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ARSENITE OXIDASE PROTEIN COMPLEX FROM RHIZOBIUM SPECIES STRAIN NT-26
Authors
:
M. Oke, J. M. Santini, J. H. Naismith
Date
:
05 Dec 11 (Deposition) - 12 Dec 12 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: C,D,E,F (1x)
Biol. Unit 2: A,B,G,H (1x)
Biol. Unit 3: A,B,G,H (1x)
Keywords
:
Oxidoreductase, Rieske, Iron Sulfur, Molybdopterin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. P. Warelow, M. Oke, B. Schoepp-Cothenet, J. U. Dahl, N. Bruselat, G. N. Sivalingam, S. Leimkuhler, K. Thalassinos, U. Kappler, J. H. Naismith, J. M. Santini
The Respiratory Arsenite Oxidase: Structure And The Role Of Residues Surrounding The Rieske Cluster.
Plos One V. 8 72535 2013
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: MOLYBDENUM(IV) ION (4MOa)
1b: MOLYBDENUM(IV) ION (4MOb)
1c: MOLYBDENUM(IV) ION (4MOc)
1d: MOLYBDENUM(IV) ION (4MOd)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
2c: FE3-S4 CLUSTER (F3Sc)
2d: FE3-S4 CLUSTER (F3Sd)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
4a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
4b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
4c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
4d: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDd)
4e: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDe)
4f: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDf)
4g: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDg)
4h: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDh)
5a: OXYGEN ATOM (Oa)
5b: OXYGEN ATOM (Ob)
5c: OXYGEN ATOM (Oc)
5d: OXYGEN ATOM (Od)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4MO
2
Ligand/Ion
MOLYBDENUM(IV) ION
2
F3S
2
Ligand/Ion
FE3-S4 CLUSTER
3
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
MGD
4
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
5
O
-1
Ligand/Ion
OXYGEN ATOM
[
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Sites
(12, 12)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
GLY C:174 , HIS C:199 , ASN C:200 , LYS C:413 , TRP C:417 , GLY C:486 , CYS C:487 , ASP C:488 , THR C:492 , VAL C:543 , ASP C:544 , ILE C:545 , ILE C:546 , THR C:548 , ALA C:560 , ALA C:561 , THR C:562 , ASP C:593 , ASN C:718 , ARG C:720 , GLN C:726 , SER C:727 , TYR C:729 , PHE C:792 , GLN C:799 , TYR C:815 , LYS C:816 , MGD C:2002 , O C:2003 , 4MO C:2004
BINDING SITE FOR RESIDUE MGD C2001
02
AC8
SOFTWARE
ARG C:104 , GLY C:236 , THR C:237 , ASN C:238 , GLU C:241 , THR C:242 , GLN C:243 , VAL C:280 , ASP C:281 , PRO C:282 , ARG C:283 , THR C:285 , GLY C:308 , ASP C:310 , GLU C:412 , LYS C:413 , GLY C:414 , GLY C:449 , GLY C:450 , HIS C:451 , ASN C:717 , GLY C:719 , ARG C:720 , ALA C:721 , ASN C:722 , VAL C:724 , TRP C:725 , GLN C:726 , LYS C:816 , GLN C:817 , MGD C:2001 , O C:2003 , 4MO C:2004
BINDING SITE FOR RESIDUE MGD C2002
03
AC9
SOFTWARE
ASN C:200 , GLU C:207 , LYS C:413 , MGD C:2001 , MGD C:2002 , 4MO C:2004
BINDING SITE FOR RESIDUE O C2003
04
BC1
SOFTWARE
LYS C:413 , ARG C:720 , MGD C:2001 , MGD C:2002 , O C:2003
BINDING SITE FOR RESIDUE 4MO C2004
05
BC2
SOFTWARE
CYS C:24 , CYS C:27 , GLY C:30 , CYS C:31 , TYR C:33 , SER C:102 , ARG C:104 , ASN C:245
BINDING SITE FOR RESIDUE F3S C2005
06
BC3
SOFTWARE
CYS D:103 , HIS D:105 , LYS D:106 , CYS D:121 , HIS D:124 , SER D:126
BINDING SITE FOR RESIDUE FES D2006
07
BC4
SOFTWARE
GLY E:174 , HIS E:199 , ASN E:200 , LYS E:413 , TRP E:417 , GLY E:486 , CYS E:487 , ASP E:488 , THR E:492 , VAL E:543 , ASP E:544 , ILE E:545 , ILE E:546 , THR E:548 , ALA E:560 , ALA E:561 , THR E:562 , ASP E:593 , ASN E:718 , ARG E:720 , GLN E:726 , SER E:727 , TYR E:729 , PHE E:792 , GLN E:799 , TYR E:815 , LYS E:816 , MGD E:2002 , O E:2003 , 4MO E:2004
BINDING SITE FOR RESIDUE MGD E2001
08
BC5
SOFTWARE
ARG E:104 , GLY E:236 , THR E:237 , ASN E:238 , GLU E:241 , THR E:242 , GLN E:243 , VAL E:280 , ASP E:281 , PRO E:282 , ARG E:283 , THR E:285 , GLY E:308 , ASP E:310 , GLU E:412 , LYS E:413 , GLY E:414 , GLY E:449 , GLY E:450 , HIS E:451 , ASN E:717 , GLY E:719 , ARG E:720 , ALA E:721 , ASN E:722 , VAL E:724 , TRP E:725 , GLN E:726 , LYS E:816 , GLN E:817 , MGD E:2001 , O E:2003 , 4MO E:2004
BINDING SITE FOR RESIDUE MGD E2002
09
BC6
SOFTWARE
HIS E:199 , ASN E:200 , HIS E:451 , MGD E:2001 , MGD E:2002 , 4MO E:2004
BINDING SITE FOR RESIDUE O E2003
10
BC7
SOFTWARE
LYS E:413 , ARG E:720 , MGD E:2001 , MGD E:2002 , O E:2003
BINDING SITE FOR RESIDUE 4MO E2004
11
BC8
SOFTWARE
CYS E:24 , CYS E:27 , GLY E:30 , CYS E:31 , TYR E:33 , SER E:102 , ARG E:104 , GLY E:105 , ASN E:245
BINDING SITE FOR RESIDUE F3S E2005
12
BC9
SOFTWARE
CYS F:103 , HIS F:105 , LYS F:106 , CYS F:121 , HIS F:124 , SER F:126
BINDING SITE FOR RESIDUE FES F2006
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4aayb_ (B:)
1b: SCOP_d4aayd_ (D:)
1c: SCOP_d4aayf_ (F:)
1d: SCOP_d4aayh_ (H:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
automated matches
(22)
Protein domain
:
automated matches
(22)
Arsenite-oxidising bacterium [TaxId: 97708]
(1)
1a
d4aayb_
B:
1b
d4aayd_
D:
1c
d4aayf_
F:
1d
d4aayh_
H:
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CATH Domains
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1.2 MB)
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Biol.Unit 1 (621 KB)
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Biol.Unit 3 (625 KB)
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