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4AAU
Asym. Unit
Info
Asym.Unit (945 KB)
Biol.Unit 1 (932 KB)
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(1)
Title
:
ATP-TRIGGERED MOLECULAR MECHANICS OF THE CHAPERONIN GROEL
Authors
:
D. K. Clare, D. Vasishtan, S. Stagg, J. Quispe, G. W. Farr, M. Topf, A. L. H H. R. Saibil
Date
:
05 Dec 11 (Deposition) - 12 Dec 12 (Release) - 12 Dec 12 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
8.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. K. Clare, D. Vasishtan, S. Stagg, J. Quispe, G. W. Farr, M. Topf, A. L. Horwich, H. R. Saibil
Atp-Triggered Conformational Changes Delineate Substrate- Binding And -Folding Mechanics Of The Groel Chaperonin.
Cell(Cambridge, Mass. ) V. 149 113 2012
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Hetero Components
(3, 42)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
1e: ADENOSINE-5'-TRIPHOSPHATE (ATPe)
1f: ADENOSINE-5'-TRIPHOSPHATE (ATPf)
1g: ADENOSINE-5'-TRIPHOSPHATE (ATPg)
1h: ADENOSINE-5'-TRIPHOSPHATE (ATPh)
1i: ADENOSINE-5'-TRIPHOSPHATE (ATPi)
1j: ADENOSINE-5'-TRIPHOSPHATE (ATPj)
1k: ADENOSINE-5'-TRIPHOSPHATE (ATPk)
1l: ADENOSINE-5'-TRIPHOSPHATE (ATPl)
1m: ADENOSINE-5'-TRIPHOSPHATE (ATPm)
1n: ADENOSINE-5'-TRIPHOSPHATE (ATPn)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
3i: PHOSPHATE ION (PO4i)
3j: PHOSPHATE ION (PO4j)
3k: PHOSPHATE ION (PO4k)
3l: PHOSPHATE ION (PO4l)
3m: PHOSPHATE ION (PO4m)
3n: PHOSPHATE ION (PO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
14
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MG
14
Ligand/Ion
MAGNESIUM ION
3
PO4
14
Ligand/Ion
PHOSPHATE ION
[
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:30 , LEU A:31 , GLY A:53 , THR A:90 , ATP A:1528
BINDING SITE FOR RESIDUE PO4 A1527
02
AC2
SOFTWARE
LEU A:31 , GLY A:32 , PRO A:33 , GLY A:53 , ASP A:87 , GLY A:88 , THR A:89 , THR A:90 , THR A:91 , ILE A:150 , ASN A:153 , GLY A:414 , GLY A:415 , TYR A:478 , ASN A:479 , ALA A:480 , ALA A:481 , ILE A:493 , ASP A:495 , PO4 A:1527
BINDING SITE FOR RESIDUE ATP A1528
03
AC3
SOFTWARE
THR B:30 , LEU B:31 , GLY B:53 , THR B:90 , ATP B:1528
BINDING SITE FOR RESIDUE PO4 B1527
04
AC4
SOFTWARE
LEU B:31 , GLY B:32 , PRO B:33 , GLY B:53 , ASP B:87 , GLY B:88 , THR B:89 , THR B:90 , THR B:91 , ILE B:150 , ASN B:153 , GLY B:414 , GLY B:415 , TYR B:478 , ASN B:479 , ALA B:480 , ALA B:481 , ILE B:493 , ASP B:495 , PO4 B:1527
BINDING SITE FOR RESIDUE ATP B1528
05
AC5
SOFTWARE
THR C:30 , LEU C:31 , GLY C:53 , THR C:90 , ATP C:1528
BINDING SITE FOR RESIDUE PO4 C1527
06
AC6
SOFTWARE
LEU C:31 , GLY C:32 , PRO C:33 , GLY C:53 , ASP C:87 , GLY C:88 , THR C:89 , THR C:90 , THR C:91 , ILE C:150 , ASN C:153 , GLY C:414 , GLY C:415 , TYR C:478 , ASN C:479 , ALA C:480 , ALA C:481 , ILE C:493 , ASP C:495 , PO4 C:1527
BINDING SITE FOR RESIDUE ATP C1528
07
AC7
SOFTWARE
THR D:30 , LEU D:31 , GLY D:53 , THR D:90 , ATP D:1528
BINDING SITE FOR RESIDUE PO4 D1527
08
AC8
SOFTWARE
LEU D:31 , GLY D:32 , PRO D:33 , GLY D:53 , ASP D:87 , GLY D:88 , THR D:89 , THR D:90 , THR D:91 , ILE D:150 , ASN D:153 , GLY D:414 , GLY D:415 , TYR D:478 , ASN D:479 , ALA D:480 , ALA D:481 , ILE D:493 , ASP D:495 , PO4 D:1527
BINDING SITE FOR RESIDUE ATP D1528
09
AC9
SOFTWARE
THR E:30 , LEU E:31 , GLY E:53 , THR E:90 , ATP E:1528
BINDING SITE FOR RESIDUE PO4 E1527
10
BC1
SOFTWARE
LEU E:31 , GLY E:32 , PRO E:33 , GLY E:53 , ASP E:87 , GLY E:88 , THR E:89 , THR E:90 , THR E:91 , ILE E:150 , ASN E:153 , GLY E:414 , GLY E:415 , TYR E:478 , ASN E:479 , ALA E:480 , ALA E:481 , ILE E:493 , ASP E:495 , PO4 E:1527
BINDING SITE FOR RESIDUE ATP E1528
11
BC2
SOFTWARE
THR F:30 , LEU F:31 , GLY F:53 , THR F:90 , ATP F:1528
BINDING SITE FOR RESIDUE PO4 F1527
12
BC3
SOFTWARE
LEU F:31 , GLY F:32 , PRO F:33 , GLY F:53 , ASP F:87 , GLY F:88 , THR F:89 , THR F:90 , THR F:91 , ILE F:150 , ASN F:153 , GLY F:414 , GLY F:415 , TYR F:478 , ASN F:479 , ALA F:480 , ALA F:481 , ILE F:493 , ASP F:495 , PO4 F:1527
BINDING SITE FOR RESIDUE ATP F1528
13
BC4
SOFTWARE
THR G:30 , LEU G:31 , GLY G:53 , THR G:90 , ATP G:1528
BINDING SITE FOR RESIDUE PO4 G1527
14
BC5
SOFTWARE
LEU G:31 , GLY G:32 , PRO G:33 , GLY G:53 , ASP G:87 , GLY G:88 , THR G:89 , THR G:90 , THR G:91 , ILE G:150 , ASN G:153 , GLY G:414 , GLY G:415 , TYR G:478 , ASN G:479 , ALA G:480 , ALA G:481 , ILE G:493 , ASP G:495 , PO4 G:1527
BINDING SITE FOR RESIDUE ATP G1528
15
BC6
SOFTWARE
LEU H:31 , GLY H:53 , THR H:90 , ATP H:1527
BINDING SITE FOR RESIDUE PO4 H1526
16
BC7
SOFTWARE
LEU H:31 , GLY H:32 , PRO H:33 , GLY H:53 , ASP H:87 , GLY H:88 , THR H:89 , THR H:90 , THR H:91 , GLY H:414 , GLY H:415 , TYR H:478 , ASN H:479 , ALA H:480 , ALA H:481 , ILE H:493 , ASP H:495 , PO4 H:1526
BINDING SITE FOR RESIDUE ATP H1527
17
BC8
SOFTWARE
LEU I:31 , GLY I:53 , THR I:90 , ATP I:1527
BINDING SITE FOR RESIDUE PO4 I1526
18
BC9
SOFTWARE
LEU I:31 , GLY I:32 , PRO I:33 , GLY I:53 , ASP I:87 , GLY I:88 , THR I:89 , THR I:90 , THR I:91 , ILE I:150 , GLY I:414 , GLY I:415 , ASN I:479 , ILE I:493 , ASP I:495 , PO4 I:1526
BINDING SITE FOR RESIDUE ATP I1527
19
CC1
SOFTWARE
LEU J:31 , GLY J:53 , THR J:90 , ATP J:1527
BINDING SITE FOR RESIDUE PO4 J1526
20
CC2
SOFTWARE
LEU J:31 , GLY J:32 , PRO J:33 , GLY J:53 , ASP J:87 , GLY J:88 , THR J:89 , THR J:90 , THR J:91 , ILE J:150 , GLY J:414 , GLY J:415 , ASN J:479 , ILE J:493 , ASP J:495 , PO4 J:1526
BINDING SITE FOR RESIDUE ATP J1527
21
CC3
SOFTWARE
LYS K:51 , ASP K:52 , GLY K:53 , ATP K:1527
BINDING SITE FOR RESIDUE PO4 K1526
22
CC4
SOFTWARE
LEU K:31 , PRO K:33 , ASP K:52 , GLY K:53 , ASP K:87 , THR K:89 , THR K:90 , THR K:149 , ILE K:150 , ASN K:153 , SER K:154 , ASN K:479 , ALA K:481 , ILE K:493 , PO4 K:1526
BINDING SITE FOR RESIDUE ATP K1527
23
CC5
SOFTWARE
LEU L:31 , GLY L:53 , THR L:90 , ATP L:1527
BINDING SITE FOR RESIDUE PO4 L1526
24
CC6
SOFTWARE
LEU L:31 , GLY L:32 , PRO L:33 , GLY L:53 , ASP L:87 , GLY L:88 , THR L:89 , THR L:90 , THR L:91 , ILE L:150 , GLY L:414 , GLY L:415 , ASN L:479 , ILE L:493 , ASP L:495 , PO4 L:1526
BINDING SITE FOR RESIDUE ATP L1527
25
CC7
SOFTWARE
ILE M:150 , ATP M:1527
BINDING SITE FOR RESIDUE PO4 M1526
26
CC8
SOFTWARE
LEU M:31 , GLY M:32 , PRO M:33 , ASP M:87 , GLY M:88 , THR M:90 , THR M:91 , THR M:149 , ILE M:150 , TYR M:478 , ASN M:479 , ALA M:480 , MET M:488 , ILE M:493 , PO4 M:1526
BINDING SITE FOR RESIDUE ATP M1527
27
CC9
SOFTWARE
LEU N:31 , GLY N:53 , THR N:90 , ATP N:1527
BINDING SITE FOR RESIDUE PO4 N1526
28
DC1
SOFTWARE
LEU N:31 , GLY N:32 , PRO N:33 , GLY N:53 , ASP N:87 , GLY N:88 , THR N:89 , THR N:90 , THR N:91 , GLY N:414 , GLY N:415 , ASN N:479 , ALA N:480 , ILE N:493 , ASP N:495 , PO4 N:1526
BINDING SITE FOR RESIDUE ATP N1527
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 14)
Info
All PROSITE Patterns/Profiles
1: CHAPERONINS_CPN60 (A:405-416,B:405-416,C:405-416,D:40...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHAPERONINS_CPN60
PS00296
Chaperonins cpn60 signature.
CH60_ECOLI
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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