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4A6S
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
STRUCTURE OF THE PAIL LECTIN FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH 2-NAPHTYL-1-THIO-BETA-D-GALACTOPYRANOSIDE
Authors
:
J. Rodrigue, G. Ganne, B. Blanchard, C. Saucier, D. Giguere, T. S. Chiao A. Varrot, A. Imberty, R. Roy
Date
:
08 Nov 11 (Deposition) - 17 Oct 12 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Sugar-Binding Protein, Glycomimetic
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Rodrigue, G. Ganne, B. Blanchard, C. Saucier, D. Giguere, T. C. Shiao, A. Varrot, A. Imberty, R. Roy
Aromatic Thioglycoside Inhibitors Against The Virulence Factor Leca From Pseudomonas Aeruginosa.
Org. Biomol. Chem. V. 11 6906 2013
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: NAPHTHALEN-2-YL 1-THIO-BETA-D-GALA... (GS9a)
2b: NAPHTHALEN-2-YL 1-THIO-BETA-D-GALA... (GS9b)
2c: NAPHTHALEN-2-YL 1-THIO-BETA-D-GALA... (GS9c)
2d: NAPHTHALEN-2-YL 1-THIO-BETA-D-GALA... (GS9d)
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No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GS9
4
Ligand/Ion
NAPHTHALEN-2-YL 1-THIO-BETA-D-GALACTOPYRANOSIDE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:36 , ASP A:100 , THR A:104 , ASN A:107 , ASN A:108 , GS9 A:1123
BINDING SITE FOR RESIDUE CA A1122
2
AC2
SOFTWARE
TYR A:36 , HIS A:50 , ASP A:100 , THR A:104 , ASN A:107 , CA A:1122 , HOH A:2054 , HOH A:2081 , HIS B:58 , ASP B:59 , ALA B:60 , PHE B:61
BINDING SITE FOR RESIDUE GS9 A1123
3
AC3
SOFTWARE
TYR B:36 , ASP B:100 , THR B:104 , ASN B:107 , ASN B:108 , GS9 B:1123
BINDING SITE FOR RESIDUE CA B1122
4
AC4
SOFTWARE
TYR B:36 , GLY B:37 , HIS B:50 , GLN B:53 , ASP B:100 , VAL B:101 , THR B:104 , ASN B:107 , CA B:1122 , HOH B:2037
BINDING SITE FOR RESIDUE GS9 B1123
5
AC5
SOFTWARE
TYR C:36 , ASP C:100 , THR C:104 , ASN C:107 , ASN C:108 , GS9 C:1123
BINDING SITE FOR RESIDUE CA C1122
6
AC6
SOFTWARE
TYR C:36 , HIS C:50 , GLN C:53 , ASP C:100 , VAL C:101 , THR C:104 , ASN C:107 , CA C:1122
BINDING SITE FOR RESIDUE GS9 C1123
7
AC7
SOFTWARE
TYR D:36 , ASP D:100 , THR D:104 , ASN D:107 , ASN D:108 , GS9 D:1123
BINDING SITE FOR RESIDUE CA D1122
8
AC8
SOFTWARE
HIS C:58 , ASP C:59 , ALA C:60 , PHE C:61 , TYR D:36 , HIS D:50 , ASP D:100 , THR D:104 , ASN D:107 , CA D:1122 , HOH D:2050
BINDING SITE FOR RESIDUE GS9 D1123
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SAPs(SNPs)/Variants
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4a6sa_ (A:)
1b: SCOP_d4a6sb_ (B:)
1c: SCOP_d4a6sc_ (C:)
1d: SCOP_d4a6sd_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PA-IL, galactose-binding lectin 1
(12)
Protein domain
:
PA-IL, galactose-binding lectin 1
(12)
Pseudomonas aeruginosa [TaxId: 287]
(12)
1a
d4a6sa_
A:
1b
d4a6sb_
B:
1c
d4a6sc_
C:
1d
d4a6sd_
D:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (166 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (81 KB)
Header - Biol.Unit 2
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