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4A4P
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SEC7 DOMAIN FROM HUMAN CYTOHESIN1
Authors
:
J. C. Zeeh, A. W. Thompson, J. Cherfils, V. Biou
Date
:
19 Oct 11 (Deposition) - 31 Oct 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
All Alpha, Guanine-Nucleotide Releasing Factor, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Zeeh, A. W. Thompson, J. Cherfils, V. Biou
Crystal Structure Of The Sec7 Domain From Human Cytohesin1
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:166 , PHE A:195 , HOH A:2210 , ASP B:166 , GOL B:1253 , HOH B:2166 , HOH B:2168
BINDING SITE FOR RESIDUE GOL A1253
2
AC2
SOFTWARE
ASP A:166 , GOL A:1253 , ASP B:166 , TYR B:191 , PHE B:195 , HOH B:2167
BINDING SITE FOR RESIDUE GOL B1253
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(6, 12)
Info
All Exons
Exon 1.9b (A:67-83 | B:67-83)
Exon 1.10 (A:84-123 | B:84-123)
Exon 1.11b (A:123-150 | B:123-150)
Exon 1.12c (A:150-188 | B:150-188)
Exon 1.13 (A:188-237 | B:188-237)
Exon 1.14b (A:238-252 | B:238-252)
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All Exon Boundaries
1: Boundary 1.8/1.9b
2: Boundary 1.9b/1.10
3: Boundary 1.10/1.11b
4: Boundary 1.11b/1.12c
5: Boundary 1.12c/1.13
6: Boundary 1.13/1.14b
7: Boundary 1.14b/1.16b
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000361101
1b
ENSE00001287973
chr17:
76778376-76778284
93
CYH1_HUMAN
1-8
8
0
-
-
1.7a
ENST00000361101
7a
ENSE00001674390
chr17:
76705814-76705732
83
CYH1_HUMAN
8-35
28
0
-
-
1.8
ENST00000361101
8
ENSE00000745796
chr17:
76704343-76704279
65
CYH1_HUMAN
36-57
22
0
-
-
1.9b
ENST00000361101
9b
ENSE00000949392
chr17:
76698686-76698620
67
CYH1_HUMAN
57-79
23
2
A:67-83
B:67-83
17
17
1.10
ENST00000361101
10
ENSE00001731743
chr17:
76698322-76698204
119
CYH1_HUMAN
80-119
40
2
A:84-123
B:84-123
40
40
1.11b
ENST00000361101
11b
ENSE00000949394
chr17:
76697833-76697753
81
CYH1_HUMAN
119-146
28
2
A:123-150
B:123-150
28
28
1.12c
ENST00000361101
12c
ENSE00002171956
chr17:
76696525-76696413
113
CYH1_HUMAN
146-184
39
2
A:150-188
B:150-188
39
39
1.13
ENST00000361101
13
ENSE00000745793
chr17:
76695050-76694902
149
CYH1_HUMAN
184-233
50
2
A:188-237
B:188-237
50
50
1.14b
ENST00000361101
14b
ENSE00001662887
chr17:
76694462-76694350
113
CYH1_HUMAN
234-271
38
2
A:238-252
B:238-252
15
15
1.16b
ENST00000361101
16b
ENSE00001753312
chr17:
76688577-76688499
79
CYH1_HUMAN
271-297
27
0
-
-
1.17b
ENST00000361101
17b
ENSE00001287897
chr17:
76677124-76677053
72
CYH1_HUMAN
298-321
24
0
-
-
1.18
ENST00000361101
18
ENSE00001287887
chr17:
76676426-76676272
155
CYH1_HUMAN
322-373
52
0
-
-
1.20e
ENST00000361101
20e
ENSE00001287965
chr17:
76672251-76670130
2122
CYH1_HUMAN
373-398
26
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4a4pa_ (A:)
1b: SCOP_d4a4pb_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Sec7 domain
(22)
Family
:
Sec7 domain
(14)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d4a4pa_
A:
1b
d4a4pb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (73 KB)
Header - Asym.Unit
Biol.Unit 1 (36 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
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