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4A4G
Asym. Unit
Info
Asym.Unit (337 KB)
Biol.Unit 1 (18 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF SMN TUDOR DOMAIN IN COMPLEX WITH ASYMMETRICALLY DIMETHYLATED ARGININE
Authors
:
K. Tripsianes, T. Madl, M. Machyna, D. Fessas, C. Englbrecht, U. Fische K. M. Neugebauer, M. Sattler
Date
:
12 Oct 11 (Deposition) - 30 Nov 11 (Release) - 06 Nov 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tripsianes, T. Madl, M. Machyna, D. Fessas, C. Englbrecht, U. Fischer, K. M. Neugebauer, M. Sattler
Structural Basis For Dimethyl-Arginine Recognition By The Tudor Domains Of Human Smn And Spf30 Proteins
Nat. Struct. Mol. Biol. V. 18 1414 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NG,NG-DIMETHYL-L-ARGININE (DA2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DA2
1
Ligand/Ion
NG,NG-DIMETHYL-L-ARGININE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:102 , TYR A:109 , TYR A:127 , TYR A:130 , ASN A:132
BINDING SITE FOR RESIDUE DA2 A1148
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_034805 (G95R, chain A, )
2: VAR_034806 (A111G, chain A, )
3: VAR_034807 (I116F, chain A, )
4: VAR_034808 (Q136E, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034805
G
95
R
SMN_HUMAN
Disease (SMA3)
---
A
G
95
R
2
UniProt
VAR_034806
A
111
G
SMN_HUMAN
Disease (SMA2)
---
A
A
111
G
3
UniProt
VAR_034807
I
116
F
SMN_HUMAN
Disease (SMA1)
---
A
I
116
F
4
UniProt
VAR_034808
Q
136
E
SMN_HUMAN
Disease (SMA1)
---
A
Q
136
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TUDOR (A:91-147)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUDOR
PS50304
Tudor domain profile.
SMN_HUMAN
91-151
1
A:91-147
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:84-91)
Exon 1.4a (A:92-147)
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All Exon Boundaries
1: Boundary 1.2b/1.3
2: Boundary 1.3/1.4a
3: Boundary 1.4a/1.5b
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000380743
1b
ENSE00001904512
chr5:
69345439-69345593
155
SMN_HUMAN
1-27
27
0
-
-
1.2b
ENST00000380743
2b
ENSE00001725187
chr5:
69359242-69359313
72
SMN_HUMAN
28-51
24
0
-
-
1.3
ENST00000380743
3
ENSE00001607984
chr5:
69361792-69361911
120
SMN_HUMAN
52-91
40
1
A:84-91
8
1.4a
ENST00000380743
4a
ENSE00001656721
chr5:
69362761-69362961
201
SMN_HUMAN
92-158
67
1
A:92-147
56
1.5b
ENST00000380743
5b
ENSE00001749658
chr5:
69363121-69363273
153
SMN_HUMAN
159-209
51
0
-
-
1.7b
ENST00000380743
7b
ENSE00001651294
chr5:
69365062-69365157
96
SMN_HUMAN
210-241
32
0
-
-
1.8a
ENST00000380743
8a
ENSE00001730323
chr5:
69366468-69366578
111
SMN_HUMAN
242-278
37
0
-
-
1.10a
ENST00000380743
10a
ENSE00001755872
chr5:
69372348-69372401
54
SMN_HUMAN
279-294
16
0
-
-
1.11c
ENST00000380743
11c
ENSE00001812360
chr5:
69372846-69373419
574
SMN_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4a4ga_ (A:)
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(
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
Tudor domain
(24)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d4a4ga_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (337 KB)
Header - Asym.Unit
Biol.Unit 1 (18 KB)
Header - Biol.Unit 1
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