PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4A2Y
Biol. Unit 2
Info
Asym.Unit (59 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (26 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE HUMAN EOSINOPHIL CATIONIC PROTEIN IN COMPLEX WITH CITRATE ANIONS
Authors
:
E. Boix, D. Pulido, M. Moussaoui, V. Nogues, S. Russi
Date
:
29 Sep 11 (Deposition) - 27 Jun 12 (Release) - 27 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Oxidoreductase, Antimicrobial, Cytotoxic
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Boix, D. Pulido, M. Moussaoui, V. Nogues, S. Russi
The Sulfate-Binding Site Structure Of The Human Eosinophil Cationic Protein As Revealed By A New Crystal Form.
J. Struct. Biol. V. 179 1 2012
[
close entry info
]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
1d: CITRIC ACID (CITd)
1e: CITRIC ACID (CITe)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
3
Ligand/Ion
CITRIC ACID
2
MPD
-1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:46 , ASN A:50 , SER A:74 , ARG A:75 , PHE A:76 , VAL A:78 , TYR A:107 , HOH A:2119 , HOH A:2121 , HOH A:2126 , HOH A:2129 , HOH A:2222 , HOH A:2223 , ARG B:121
BINDING SITE FOR RESIDUE CIT A 301
2
AC3
SOFTWARE
ARG A:61 , ARG A:66 , HOH A:2149 , THR B:46 , ASN B:50 , VAL B:54 , ASN B:57 , SER B:74 , ARG B:75 , PHE B:76 , VAL B:78 , TYR B:107 , HOH B:2047 , HOH B:2048
BINDING SITE FOR RESIDUE CIT B 301
3
AC4
SOFTWARE
ARG B:34 , CYS B:37 , LYS B:38 , ASN B:39 , HOH B:2078 , HOH B:2079
BINDING SITE FOR RESIDUE CIT B 302
4
AC5
SOFTWARE
ARG A:45 , HOH A:2057 , HOH A:2058 , HOH A:2059 , ARG B:114 , PRO B:116 , HOH B:2064 , HOH B:2065 , HOH B:2066 , HOH B:2082
BINDING SITE FOR RESIDUE CIT B 303
5
AC6
SOFTWARE
ARG A:97 , HOH A:2065 , HOH A:2066 , HOH A:2188 , HOH A:2189 , HOH A:2226 , HOH A:2227 , HOH A:2228 , ARG B:77 , HOH B:2050 , HOH B:2051
BINDING SITE FOR RESIDUE MPD A1134
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014109 (R45C, chain B, )
2: VAR_013149 (R97R, chain B, )
3: VAR_029017 (G103R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014109
R
72
C
ECP_HUMAN
Polymorphism
151169198
B
R
45
C
2
UniProt
VAR_013149
T
124
R
ECP_HUMAN
Polymorphism
2073342
B
R
97
R
3
UniProt
VAR_029017
G
130
R
ECP_HUMAN
Polymorphism
12147890
B
G
103
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (B:37-43)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
ECP_HUMAN
64-70
1
-
B:37-43
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4a2ya_ (A:)
1b: SCOP_d4a2yb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
Eosinophil cationic protein (ECP), ribonuclease 3
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d4a2ya_
A:
1b
d4a2yb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (59 KB)
Header - Asym.Unit
Biol.Unit 1 (29 KB)
Header - Biol.Unit 1
Biol.Unit 2 (26 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4A2Y
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help