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4A2L
Asym. Unit
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (497 KB)
Biol.Unit 2 (500 KB)
Biol.Unit 3 (497 KB)
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(1)
Title
:
STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE HEPARIN AND HEPARAN SULPHATE SENSING HYBRID TWO COMPONENT SYSTEM BT4663 IN APO AND LIGAND BOUND FORMS
Authors
:
E. C. Lowe, A. Basle, M. Czjzek, S. J. Firbank, D. N. Bolam
Date
:
27 Sep 11 (Deposition) - 02 May 12 (Release) - 19 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Transcription, Beta-Propeller
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. C. Lowe, A. Basle, M. Czjzek, S. J. Firbank, D. N. Bolam
A Scissor Blade-Like Closing Mechanism Implicated In Transmembrane Signaling In A Bacteroides Hybrid Two- Component System.
Proc. Natl. Acad. Sci. Usa V. 109 7298 2012
[
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Hetero Components
(7, 29)
Info
All Hetero Components
1a: NONAETHYLENE GLYCOL (2PEa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
4a: OXALOACETATE ION (OAAa)
4b: OXALOACETATE ION (OAAb)
4c: OXALOACETATE ION (OAAc)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
5j: DI(HYDROXYETHYL)ETHER (PEGj)
5k: DI(HYDROXYETHYL)ETHER (PEGk)
6a: TETRAETHYLENE GLYCOL (PG4a)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
7d: TRIETHYLENE GLYCOL (PGEd)
7e: TRIETHYLENE GLYCOL (PGEe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
1
Ligand/Ion
NONAETHYLENE GLYCOL
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
MES
3
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
OAA
3
Ligand/Ion
OXALOACETATE ION
5
PEG
11
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
5
Ligand/Ion
TRIETHYLENE GLYCOL
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:598 , ARG A:618 , LEU A:660 , ASP A:662
BINDING SITE FOR RESIDUE PGE A1785
02
AC2
SOFTWARE
ARG A:656 , LEU A:659 , GLY F:754 , THR F:755 , VAL F:780 , HOH F:2048
BINDING SITE FOR RESIDUE PGE A1786
03
AC3
SOFTWARE
SER A:272
BINDING SITE FOR RESIDUE EDO A1787
04
AC4
SOFTWARE
TYR A:739 , LYS A:761
BINDING SITE FOR RESIDUE PEG A1788
05
AC5
SOFTWARE
SER B:272
BINDING SITE FOR RESIDUE PEG B1784
06
AC6
SOFTWARE
LEU B:660 , ASP B:662
BINDING SITE FOR RESIDUE PG4 B1785
07
AC7
SOFTWARE
TRP B:737 , TYR B:739 , LYS B:761 , TRP B:769
BINDING SITE FOR RESIDUE PGE B1786
08
AC8
SOFTWARE
ASN A:375 , ASN A:407 , LYS A:409 , HIS A:425 , ARG B:266 , PHE B:281 , SER B:311 , ARG B:313 , TYR B:328
BINDING SITE FOR RESIDUE MES B1789
09
AC9
SOFTWARE
SER E:168
BINDING SITE FOR RESIDUE PEG C1784
10
BC1
SOFTWARE
SER C:552 , GLU C:593 , ASP C:594 , ARG C:638 , HOH C:2055
BINDING SITE FOR RESIDUE PEG C1785
11
BC2
SOFTWARE
SER C:520 , VAL C:521 , LYS C:531 , SER C:533 , ILE C:534 , LEU C:535
BINDING SITE FOR RESIDUE EDO C1786
12
BC3
SOFTWARE
ASP C:460 , GLY C:461 , ARG C:505 , HIS C:508 , LYS C:509 , GLN C:524
BINDING SITE FOR RESIDUE PEG C1787
13
BC4
SOFTWARE
ARG C:618 , SER C:765 , ASP C:766 , OAA C:1789
BINDING SITE FOR RESIDUE OAA C1788
14
BC5
SOFTWARE
TYR C:739 , TRP C:769 , OAA C:1788
BINDING SITE FOR RESIDUE OAA C1789
15
BC6
SOFTWARE
ARG D:505
BINDING SITE FOR RESIDUE PEG D1784
16
BC7
SOFTWARE
GLU D:364 , ASP D:365 , SER D:640
BINDING SITE FOR RESIDUE PEG D1785
17
BC8
SOFTWARE
SER D:272 , SER D:319 , TYR D:665
BINDING SITE FOR RESIDUE EDO D1787
18
BC9
SOFTWARE
ARG D:598 , ARG D:618 , LEU D:660 , ASP D:662
BINDING SITE FOR RESIDUE 2PE D1788
19
CC1
SOFTWARE
SER D:166
BINDING SITE FOR RESIDUE PEG D1789
20
CC2
SOFTWARE
ASN C:375 , ARG D:266 , PHE D:281 , ARG D:310 , SER D:311 , ARG D:313
BINDING SITE FOR RESIDUE MES D1790
21
CC3
SOFTWARE
LYS E:366 , SER E:640
BINDING SITE FOR RESIDUE PEG E1784
22
CC4
SOFTWARE
ARG E:638
BINDING SITE FOR RESIDUE PGE E1785
23
CC5
SOFTWARE
SER E:272 , MET E:317 , SER E:319 , TYR E:665
BINDING SITE FOR RESIDUE OAA E1786
24
CC6
SOFTWARE
ARG E:266 , PHE E:281 , SER E:311 , ARG E:313 , TYR E:328 , HIS F:425
BINDING SITE FOR RESIDUE MES E1787
25
CC7
SOFTWARE
TRP F:737 , TYR F:739 , LYS F:761 , TRP F:769
BINDING SITE FOR RESIDUE PGE F1784
26
CC8
SOFTWARE
ARG F:618 , SER F:765 , ASP F:766
BINDING SITE FOR RESIDUE PEG F1785
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Hetero
Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (497 KB)
Header - Biol.Unit 1
Biol.Unit 2 (500 KB)
Header - Biol.Unit 2
Biol.Unit 3 (497 KB)
Header - Biol.Unit 3
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