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4A25
Asym. Unit
Info
Asym.Unit (231 KB)
Biol.Unit 1 (652 KB)
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(1)
Title
:
X-RAY STRUCTURE DPS FROM KINEOCOCCUS RADIOTOLERANS IN COMPLEX WITH MN (II) IONS.
Authors
:
A. Ilari, A. Fiorillo, M. Ardini, S. Stefanini, E. Chiancone
Date
:
22 Sep 11 (Deposition) - 03 Oct 12 (Release) - 15 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Metal Binding Protein, Detoxification Process
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
M. Ardini, A. Fiorillo, M. Fittipaldi, S. Stefanini, D. Gatteschi, A. Llari, E. Chiancone
Kineococcus Radiotolerans Dps Forms A Heteronuclear Mn-Fe Ferroxidase Center That May Explain The Mn-Dependent Protection Against Oxidative Stress.
Biochim. Biophys. Acta V. 1830 3745 2013
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
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No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
MN
10
Ligand/Ion
MANGANESE (II) ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:75 , GLU A:79 , HOH A:2045 , HOH A:2052 , HIS B:48
BINDING SITE FOR RESIDUE MN A1169
02
AC2
SOFTWARE
ASP A:144 , MN A:1171 , HOH A:2073 , HOH A:2075 , HOH A:2087 , ASP B:144 , ASP C:144
BINDING SITE FOR RESIDUE MN A1170
03
AC3
SOFTWARE
ASP A:144 , HIS A:147 , MN A:1170 , HOH A:2074 , HOH A:2076 , ASP B:144 , ASP C:144
BINDING SITE FOR RESIDUE MN A1171
04
AC4
SOFTWARE
ASN A:55 , ASP A:58
BINDING SITE FOR RESIDUE MN A1172
05
AC5
SOFTWARE
LYS A:45 , ARG A:71 , ARG B:71
BINDING SITE FOR RESIDUE CL A1173
06
AC6
SOFTWARE
ARG A:57 , HOH A:2030
BINDING SITE FOR RESIDUE CL A1174
07
AC7
SOFTWARE
HIS A:48 , HOH A:2023 , HOH A:2025 , ASP B:75 , GLU B:79
BINDING SITE FOR RESIDUE MN B1171
08
AC8
SOFTWARE
ASN B:55 , ASP B:58 , ASN C:55 , ASP C:58 , ASN D:55 , ASP D:58
BINDING SITE FOR RESIDUE MN B1172
09
AC9
SOFTWARE
ARG A:71 , LYS B:45 , ARG B:71
BINDING SITE FOR RESIDUE CL B1173
10
BC1
SOFTWARE
ARG B:57 , HOH B:2020 , ARG C:57 , ARG D:57
BINDING SITE FOR RESIDUE CL B1174
11
BC2
SOFTWARE
ASP C:75 , GLU C:79 , HOH C:2046 , HOH C:2053 , HIS D:48
BINDING SITE FOR RESIDUE MN C1171
12
BC3
SOFTWARE
LYS C:45 , ARG C:71 , ARG D:71
BINDING SITE FOR RESIDUE CL C1172
13
BC4
SOFTWARE
HIS C:48 , HOH C:2024 , HOH C:2026 , ASP D:75 , GLU D:79
BINDING SITE FOR RESIDUE MN D1169
14
BC5
SOFTWARE
ASP D:144 , MN D:1171 , HOH D:2060
BINDING SITE FOR RESIDUE MN D1170
15
BC6
SOFTWARE
ASP D:144 , MN D:1170 , HOH D:2059
BINDING SITE FOR RESIDUE MN D1171
16
BC7
SOFTWARE
ARG C:71 , LYS D:45 , ARG D:71
BINDING SITE FOR RESIDUE CL D1172
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4a25a_ (A:)
1b: SCOP_d4a25b_ (B:)
1c: SCOP_d4a25c_ (C:)
1d: SCOP_d4a25d_ (D:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Kineococcus radiotolerans [TaxId: 131568]
(1)
1a
d4a25a_
A:
1b
d4a25b_
B:
1c
d4a25c_
C:
1d
d4a25d_
D:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (231 KB)
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