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4A1U
Asym. Unit
Info
Asym.Unit (80 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA-BETA-FOLDAMER 2C IN COMPLEX WITH BCL-XL
Authors
:
M. D. Boersma, H. S. Haase, K. J. Kaufman, W. S. Horne, E. F. Lee, O. B. Clar B. J. Smith, P. M. Colman, S. H. Gellman, W. D. Fairlie
Date
:
20 Sep 11 (Deposition) - 28 Dec 11 (Release) - 25 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.54
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Apoptosis, Alpha-Helix, Bh3, Mimicry
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. D. Boersma, H. S. Haase, K. J. Peterson-Kaufman, E. F. Lee, O. B. Clarke, P. M. Colman, B. J. Smith, W. S. Horne, W. D. Fairlie, S. H. Gellman
Evaluation Of Diverse Alpha/Beta-Backbone Patterns For Functional Alpha-Helix Mimicry: Analogues Of The Bim Bh3 Domain.
J. Am. Chem. Soc. V. 134 315 2012
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Hetero Components
(8, 10)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: (3S)-3-AMINOBUTANOIC ACID (B3Aa)
3a: (3S)-3-AMINOHEXANEDIOIC ACID (B3Ea)
3b: (3S)-3-AMINOHEXANEDIOIC ACID (B3Eb)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
5a: (3S)-3-AMINO-6-[(DIAMINOMETHYLIDEN... (HR7a)
6a: (3S)-3-AMINO-4-(1H-INDOL-3-YL)BUTA... (HT7a)
7a: AMINO GROUP (NH2a)
8a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
B3A
1
Mod. Amino Acid
(3S)-3-AMINOBUTANOIC ACID
3
B3E
2
Mod. Amino Acid
(3S)-3-AMINOHEXANEDIOIC ACID
4
CL
2
Ligand/Ion
CHLORIDE ION
5
HR7
1
Mod. Amino Acid
(3S)-3-AMINO-6-[(DIAMINOMETHYLIDENE)AMINO]HEXANOIC ACID
6
HT7
1
Mod. Amino Acid
(3S)-3-AMINO-4-(1H-INDOL-3-YL)BUTANOIC ACID
7
NH2
1
Mod. Amino Acid
AMINO GROUP
8
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:26
BINDING SITE FOR RESIDUE CL A1207
2
AC2
SOFTWARE
LEU A:99 , ARG A:103 , ARG A:204
BINDING SITE FOR RESIDUE SO4 A1208
3
AC3
SOFTWARE
ARG A:102 , HOH A:2082 , HOH A:2113
BINDING SITE FOR RESIDUE CL A1209
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: BH4_1 (A:4-24)
2: BH4_2 (A:5-24)
3: BH3 (A:86-100)
4: BCL2_FAMILY (A:90-190)
5: BH1 (A:130-148)
6: BH2 (A:181-192)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH4_1
PS01260
Apoptosis regulator, Bcl-2 family BH4 motif signature.
B2CL1_HUMAN
4-24
1
A:4-24
2
BH4_2
PS50063
Apoptosis regulator, Bcl-2 family BH4 motif profile.
B2CL1_HUMAN
5-24
1
A:5-24
3
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
B2CL1_HUMAN
86-100
1
A:86-100
4
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
B2CL1_HUMAN
90-190
1
A:90-190
5
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
B2CL1_HUMAN
130-148
1
A:130-148
6
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
B2CL1_HUMAN
181-192
1
A:181-192
[
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Exons
(3, 3)
Info
All Exons
Exon 1.3a (A:1-188 (gaps))
Exon 1.4c (A:189-206)
Exon 2.10b (B:87-106)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4c
3: Boundary 1.4c/-
4: Boundary 2.4d/2.10b
5: Boundary 2.10b/2.14f
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376062
3a
ENSE00001469279
chr20:
30310400-30309458
943
B2CL1_HUMAN
1-188
188
1
A:1-188 (gaps)
188
1.4c
ENST00000376062
4c
ENSE00001469296
chr20:
30253889-30252255
1635
B2CL1_HUMAN
189-233
45
1
A:189-206
18
2.2b
ENST00000393256
2b
ENSE00001830376
chr2:
111878506-111878765
260
B2L11_HUMAN
-
0
0
-
-
2.4d
ENST00000393256
4d
ENSE00001008808
chr2:
111881310-111881716
407
B2L11_HUMAN
1-132
132
0
-
-
2.10b
ENST00000393256
10b
ENSE00001756661
chr2:
111907621-111907724
104
B2L11_HUMAN
132-166
35
1
B:87-106
20
2.14f
ENST00000393256
14f
ENSE00001924953
chr2:
111921710-111924587
2878
B2L11_HUMAN
167-198
32
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4a1ua_ (A:)
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Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
automated matches
(33)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d4a1ua_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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