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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
4A0P
Asym. Unit
Info
Asym.Unit (231 KB)
Biol.Unit 1 (223 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LRP6P3E3P4E4
Authors
:
S. Chen, T. Malinauskas, A. R. Aricescu, C. Siebold, E. Y. Jones
Date
:
11 Sep 11 (Deposition) - 26 Oct 11 (Release) - 11 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Signaling, Lrp6, Wnt Signalling, Wnt3A, Dkk1, Mesd
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Chen, D. Bubeck, B. T. Macdonald, W. X. Liang, J. H. Mao, T. Malinauskas, O. Llorca, A. R. Aricescu, C. Siebold, X. He, E. Y. Jone
Structural And Functional Studies Of Lrp6 Ectodomain Reveal A Platform For Wnt Signaling.
Dev. Cell V. 21 848 2011
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
CL
3
Ligand/Ion
CHLORIDE ION
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:878 , HOH A:2026 , HOH A:2027 , HOH A:2050 , HOH A:2147 , HOH A:2434 , HOH A:2435
BINDING SITE FOR RESIDUE CA A1353
02
AC2
SOFTWARE
LEU A:810 , ASN A:813 , PRO A:833 , HOH A:2127 , HOH A:2128 , HOH A:2129 , HOH A:2132
BINDING SITE FOR RESIDUE CA A1354
03
AC3
SOFTWARE
ALA A:1108 , LEU A:1109 , HOH A:2376
BINDING SITE FOR RESIDUE CL A1355
04
AC4
SOFTWARE
PHE A:1097 , PHE A:1098 , SER A:1099
BINDING SITE FOR RESIDUE CL A1356
05
AC5
SOFTWARE
PRO A:788 , ASN A:789 , ARG A:825 , GLN A:1238 , HOH A:2137
BINDING SITE FOR RESIDUE CL A1357
06
AC6
SOFTWARE
GLY A:1069 , TYR A:1070 , ALA A:1087 , GLU A:1092 , LEU A:1219 , VAL A:1220 , LYS A:1221 , GLY A:1222
BINDING SITE FOR RESIDUE EDO A1358
07
AC7
SOFTWARE
VAL A:743 , TRP A:744 , LYS A:745 , HOH A:2078 , HOH A:2081 , HOH A:2436
BINDING SITE FOR RESIDUE EDO A1359
08
AC8
SOFTWARE
HOH A:2252 , HOH A:2253 , HOH A:2280 , HOH A:2281 , HOH A:2283 , HOH A:2342 , HOH A:2437
BINDING SITE FOR RESIDUE CA A1360
09
AC9
SOFTWARE
ASN A:674 , PHE A:690 , MET A:691 , ASN A:692 , PHE A:882 , HOH A:2040
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 692 RESIDUES 1347 TO 1348
10
BC1
SOFTWARE
ASP A:843 , TYR A:844 , ASN A:859 , THR A:861 , ASN A:865
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 859 RESIDUES 1349 TO 1349
11
BC2
SOFTWARE
ALA A:924 , ASN A:926
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 926 RESIDUES 1350 TO 1350
12
BC3
SOFTWARE
TRP A:1030 , ASN A:1039 , THR A:1041 , GLY A:1045 , SER A:1047 , HOH A:2274
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A1039 RESIDUES 1351 TO 1352
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030350 (S817C, chain A, )
2: VAR_024520 (V1062I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030350
S
817
C
LRP6_HUMAN
Polymorphism
2302686
A
S
817
C
2
UniProt
VAR_024520
V
1062
I
LRP6_HUMAN
Polymorphism
2302685
A
V
1062
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: LDLRB (-|-|-|-|-|-|-|-|-|A:674-716|A:717-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRB
PS51120
LDL-receptor class B (LDLRB) repeat profile.
LRP6_HUMAN
63-106
107-149
150-193
194-236
372-414
415-457
458-501
502-544
545-584
674-716
717-759
760-802
843-885
803-839
977-1025
1026-1068
1069-1113
1114-1156
1157-1198
10
-
-
-
-
-
-
-
-
-
A:674-716
A:717-759
A:760-802
A:843-885
A:803-839
A:977-1025
A:1026-1068
A:1069-1113
A:1114-1156
A:1157-1198
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (231 KB)
Header - Asym.Unit
Biol.Unit 1 (223 KB)
Header - Biol.Unit 1
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