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4A0L
Biol. Unit 1
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Asym.Unit (1.5 MB)
Biol.Unit 1 (789 KB)
Biol.Unit 2 (790 KB)
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(1)
Title
:
STRUCTURE OF DDB1-DDB2-CUL4B-RBX1 BOUND TO A 12 BP ABASIC SITE CONTAINING DNA-DUPLEX
Authors
:
E. S. Fischer, A. Scrima, H. Gut, N. H. Thoma
Date
:
09 Sep 11 (Deposition) - 14 Dec 11 (Release) - 07 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
7.40
Chains
:
Asym. Unit : A,B,C,D,E,F,H,I,R,S,T,U
Biol. Unit 1: A,B,E,F,R,S (1x)
Biol. Unit 2: C,D,H,I,T,U (1x)
Keywords
:
Ligase-Dna-Binding Protein-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. S. Fischer, A. Scrima, K. Bohm, S. Matsumoto, G. M. Lingaraju, M. Faty, T. Yasuda, S. Cavadini, M. Wakasugi, F. Hanaoka, S. Iwai, H. Gut, K. Sugasawa, N. H. Thoma
The Molecular Basis Of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, And Activation.
Cell(Cambridge, Mass. ) V. 147 1024 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSP... (3DRa)
1b: 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSP... (3DRb)
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No.
Name
Count
Type
Full Name
1
3DR
1
Mod. Nucleotide
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_032273 (T213I, chain E, )
2: VAR_023074 (L427F, chain A, )
3: VAR_032274 (R572C, chain E, )
4: VAR_032275 (V745A, chain E, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032273
T
213
I
CUL4B_HUMAN
Unclassified
---
E
T
213
I
2
UniProt
VAR_023074
L
427
F
DDB1_HUMAN
Polymorphism
28720299
A
L
427
F
3
UniProt
VAR_032274
R
572
C
CUL4B_HUMAN
Disease (MRXS15)
---
E
R
572
C
4
UniProt
VAR_032275
V
745
A
CUL4B_HUMAN
Disease (MRXS15)
---
E
V
745
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (B:294-308)
2: CULLIN_2 (E:558-786)
3: CULLIN_1 (E:886-913)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
DDB2_DANRE
260-274
1
B:294-308
-
2
CULLIN_2
PS50069
Cullin family profile.
CUL4B_HUMAN
558-786
1
E:558-786
-
3
CULLIN_1
PS01256
Cullin family signature.
CUL4B_HUMAN
886-913
1
E:886-913
-
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Exons
(0, 0)
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Asym.Unit (1.5 MB)
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