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4A01
Asym. Unit
Info
Asym.Unit (246 KB)
Biol.Unit 1 (236 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE H-TRANSLOCATING PYROPHOSPHATASE
Authors
:
S. -M. Lin, J. -Y. Tsai, C. -D. Hsiao, C. -L. Chiu, R. -L. Pan, Y. -J. Sun
Date
:
07 Sep 11 (Deposition) - 28 Mar 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Membrane Protein, Proton Pumping
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. -M. Lin, J. -Y. Tsai, C. -D. Hsiao, C. -L. Chiu, R. -L. Pan, Y. -J. Sun
Crystal Structure Of A Membrane Embedded H1-Translocating Pyrophosphatase
Nature V. 484 399 2012
[
close entry info
]
Hetero Components
(4, 23)
Info
All Hetero Components
1a: IMIDODIPHOSPHORIC ACID (2PNa)
1b: IMIDODIPHOSPHORIC ACID (2PNb)
2a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
2b: DECYL-BETA-D-MALTOPYRANOSIDE (DMUb)
2c: DECYL-BETA-D-MALTOPYRANOSIDE (DMUc)
2d: DECYL-BETA-D-MALTOPYRANOSIDE (DMUd)
2e: DECYL-BETA-D-MALTOPYRANOSIDE (DMUe)
2f: DECYL-BETA-D-MALTOPYRANOSIDE (DMUf)
2g: DECYL-BETA-D-MALTOPYRANOSIDE (DMUg)
2h: DECYL-BETA-D-MALTOPYRANOSIDE (DMUh)
2i: DECYL-BETA-D-MALTOPYRANOSIDE (DMUi)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
4j: MAGNESIUM ION (MGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PN
2
Ligand/Ion
IMIDODIPHOSPHORIC ACID
2
DMU
9
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
3
K
2
Ligand/Ion
POTASSIUM ION
4
MG
10
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:253 , ASP A:257 , MG A:1769 , 2PN A:1773 , HOH A:2108 , HOH A:2109 , HOH A:2112
BINDING SITE FOR RESIDUE MG A1767
02
AC2
SOFTWARE
ASP A:507 , MG A:1770 , 2PN A:1773 , HOH A:2127 , HOH A:2128 , HOH A:2129 , HOH A:2134
BINDING SITE FOR RESIDUE MG A1768
03
AC3
SOFTWARE
ASP A:253 , ASP A:727 , LYS A:730 , MG A:1767 , 2PN A:1773 , HOH A:2109 , HOH A:2299
BINDING SITE FOR RESIDUE MG A1769
04
AC4
SOFTWARE
ASP A:283 , ASP A:507 , MG A:1768 , 2PN A:1773 , HOH A:2106 , HOH A:2134
BINDING SITE FOR RESIDUE MG A1770
05
AC5
SOFTWARE
ASN A:534 , ASP A:691 , 2PN A:1773 , HOH A:2216 , HOH A:2234
BINDING SITE FOR RESIDUE MG A1771
06
AC6
SOFTWARE
ASN A:534 , 2PN A:1773 , HOH A:2137 , HOH A:2214 , HOH A:2236
BINDING SITE FOR RESIDUE K A1772
07
AC7
SOFTWARE
LYS A:250 , ASP A:253 , GLU A:268 , ASP A:283 , ASP A:287 , ASP A:507 , ASN A:534 , ASP A:691 , LYS A:694 , ASP A:727 , LYS A:730 , ASP A:731 , MG A:1767 , MG A:1768 , MG A:1769 , MG A:1770 , MG A:1771 , K A:1772 , HOH A:2105 , HOH A:2106 , HOH A:2109 , HOH A:2112 , HOH A:2128 , HOH A:2134 , HOH A:2137 , HOH A:2216 , HOH A:2234 , HOH A:2236 , HOH A:2299
BINDING SITE FOR RESIDUE 2PN A1773
08
AC8
SOFTWARE
ASP B:253 , ASP B:257 , MG B:1769 , 2PN B:1773 , HOH B:2072 , HOH B:2073 , HOH B:2075
BINDING SITE FOR RESIDUE MG B1767
09
AC9
SOFTWARE
ASP B:507 , MG B:1770 , 2PN B:1773 , HOH B:2087 , HOH B:2088 , HOH B:2089 , HOH B:2094
BINDING SITE FOR RESIDUE MG B1768
10
BC1
SOFTWARE
ASP B:253 , ASP B:727 , LYS B:730 , MG B:1767 , 2PN B:1773 , HOH B:2072 , HOH B:2232
BINDING SITE FOR RESIDUE MG B1769
11
BC2
SOFTWARE
ASP B:283 , ASP B:507 , MG B:1768 , 2PN B:1773 , HOH B:2070 , HOH B:2094
BINDING SITE FOR RESIDUE MG B1770
12
BC3
SOFTWARE
ASN B:534 , ASP B:691 , K B:1772 , 2PN B:1773 , HOH B:2169 , HOH B:2179
BINDING SITE FOR RESIDUE MG B1771
13
BC4
SOFTWARE
ASN B:534 , MG B:1771 , 2PN B:1773 , HOH B:2098 , HOH B:2167 , HOH B:2169 , HOH B:2181
BINDING SITE FOR RESIDUE K B1772
14
BC5
SOFTWARE
LYS B:250 , ASP B:253 , ASP B:283 , ASP B:287 , ASP B:507 , ASN B:534 , ASP B:691 , LYS B:694 , ASP B:727 , LYS B:730 , ASP B:731 , MG B:1767 , MG B:1768 , MG B:1769 , MG B:1770 , MG B:1771 , K B:1772 , HOH B:2069 , HOH B:2070 , HOH B:2072 , HOH B:2075 , HOH B:2087 , HOH B:2088 , HOH B:2094 , HOH B:2098 , HOH B:2169 , HOH B:2179 , HOH B:2181 , HOH B:2232
BINDING SITE FOR RESIDUE 2PN B1773
15
BC6
SOFTWARE
LYS A:362 , TYR A:424 , TYR A:430 , ALA A:465 , HOH A:2164 , HOH A:2324 , HOH A:2325
BINDING SITE FOR RESIDUE DMU A1774
16
BC7
SOFTWARE
LYS A:457 , TRP B:588 , LYS B:640 , GLU B:641 , THR B:652
BINDING SITE FOR RESIDUE DMU B1774
17
BC8
SOFTWARE
TRP A:588 , MET A:592 , THR A:652 , LYS B:457 , DMU B:1777
BINDING SITE FOR RESIDUE DMU A1775
18
BC9
SOFTWARE
TYR A:95 , PHE A:99 , ASP A:636 , HOH A:2040 , HOH A:2326
BINDING SITE FOR RESIDUE DMU A1776
19
CC1
SOFTWARE
SER B:401 , TRP B:402 , HOH B:2140
BINDING SITE FOR RESIDUE DMU B1775
20
CC2
SOFTWARE
GLN A:403 , PHE B:660 , PHE B:763 , HOH B:2255
BINDING SITE FOR RESIDUE DMU B1776
21
CC3
SOFTWARE
ILE A:577 , PHE A:660 , LEU A:762 , HOH A:2328 , HOH A:2329 , DMU B:1777
BINDING SITE FOR RESIDUE DMU A1777
22
CC4
SOFTWARE
GLY A:116 , HIS A:758 , HOH A:2331 , HOH A:2332 , HOH A:2333 , HOH A:2334 , HOH A:2335
BINDING SITE FOR RESIDUE DMU A1778
23
CC5
SOFTWARE
TRP A:588 , DMU A:1775 , DMU A:1777 , TYR B:424 , TYR B:425 , LYS B:457 , ILE B:461 , HOH B:2256
BINDING SITE FOR RESIDUE DMU B1777
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (246 KB)
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