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487D
Asym. Unit
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Asym.Unit (180 KB)
Biol.Unit 1 (178 KB)
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(1)
Title
:
SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION
Authors
:
R. Brimacombe, F. Mueller
Date
:
23 Feb 00 (Deposition) - 10 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
7.50
Chains
:
Asym. Unit : H,I,J,K,L,M,N
Biol. Unit 1: H,I,J,K,L,M,N (1x)
Keywords
:
Ribosome, Large Ribosomal Subunit, Ribosomal Protein, Protein Biosynthesis, Em-Reconstruction, Atomic Structure, 3D Arrangement, Fitting
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
F. Mueller, I. Sommer, P. Baranov, R. Matadeen, M. Stoldt, J. Wohnert, M. Gorlach, M. Van Heel, R. Brimacombe
The 3D Arrangement Of The 23 S And 5 S Rrna In The Escherichia Coli 50 S Ribosomal Subunit Based On A Cryo-Electron Microscopic Reconstruction At 7. 5 A Resolution.
J. Mol. Biol. V. 298 35 2000
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
3a: AMINO GROUP (NH2a)
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No.
Name
Count
Type
Full Name
1
FMT
1
Ligand/Ion
FORMIC ACID
2
MSE
3
Mod. Amino Acid
SELENOMETHIONINE
3
NH2
1
Ligand/Ion
AMINO GROUP
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Sites
(2, 2)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET N:1 , PHE N:2
BINDING SITE FOR RESIDUE NH2 N 95
2
AC2
SOFTWARE
ARG N:93 , ALA N:94
BINDING SITE FOR RESIDUE FMT N 96
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_L9 (K:13-40)
2: RIBOSOMAL_L14 (M:60-86)
3: RIBOSOMAL_L1 (H:120-139)
4: RIBOSOMAL_L11 (L:126-140)
5: RIBOSOMAL_L6_1 (J:153-161)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L9
PS00651
Ribosomal protein L9 signature.
RL9_GEOSE
13-40
1
K:13-40
2
RIBOSOMAL_L14
PS00049
Ribosomal protein L14 signature.
RL14_GEOSE
60-86
1
M:60-86
3
RIBOSOMAL_L1
PS01199
Ribosomal protein L1 signature.
RL1_THETH
121-140
1
H:120-139
4
RIBOSOMAL_L11
PS00359
Ribosomal protein L11 signature.
RL11_THEMA
126-141
1
L:126-140
5
RIBOSOMAL_L6_1
PS00525
Ribosomal protein L6 signature 1.
RL6_GEOSE
154-162
1
J:153-161
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 7)
Info
All SCOP Domains
1a: SCOP_d487dh_ (H:)
1b: SCOP_d487di_ (I:)
1c: SCOP_d487dj_ (J:)
1d: SCOP_d487dk_ (K:)
1e: SCOP_d487dl_ (L:)
1f: SCOP_d487dm_ (M:)
1g: SCOP_d487dn_ (N:)
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Class
:
Low resolution protein structures
(283)
Fold
:
Ribosome and ribosomal fragments
(154)
Superfamily
:
Ribosome and ribosomal fragments
(154)
Family
:
Large subunit
(36)
Protein domain
:
50S subunit
(36)
Escherichia coli [TaxId: 562]
(1)
1a
d487dh_
H:
1b
d487di_
I:
1c
d487dj_
J:
1d
d487dk_
K:
1e
d487dl_
L:
1f
d487dm_
M:
1g
d487dn_
N:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (180 KB)
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