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3ZZY
Asym. Unit
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Asym.Unit (45 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (21 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A RAVER1 PRI3 PEPTIDE IN COMPLEX WITH POLYPYRIMIDINE TRACT BINDING PROTEIN RRM2
Authors
:
A. Joshi, O. Kotik-Kogan, S. Curry
Date
:
06 Sep 11 (Deposition) - 28 Dec 11 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein Binding, Peptide Binding, Rna Recognition Motif
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Joshi, M. B. Coelho, O. Kotik-Kogan, P. J. Simpson, S. J. Matthews, C. W. Smith, S. Curry
Crystallographic Analysis Of Polypyrimidine Tract-Binding Protein-Raver1 Interactions Involved In Regulation Of Alternative Splicing.
Structure V. 19 1816 2011
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (-|A:184-260,B:184-260|-|-)
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
PTBP1_HUMAN
59-143
184-260
337-411
454-529
2
-
A:184-260
B:184-260
-
-
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Exons
(3, 6)
Info
All Exons
Exon 1.6 (A:180-202 | B:180-202)
Exon 1.7 (A:203-239 | B:203-239)
Exon 1.8 (A:240-285 | B:240-283)
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1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.10
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000349038
1
ENSE00001155026
chr19:
797392-797505
114
PTBP1_HUMAN
1-3
3
0
-
-
1.2
ENST00000349038
2
ENSE00001113327
chr19:
799413-799443
31
PTBP1_HUMAN
3-13
11
0
-
-
1.3
ENST00000349038
3
ENSE00000892209
chr19:
803561-803636
76
PTBP1_HUMAN
14-39
26
0
-
-
1.4
ENST00000349038
4
ENSE00000768682
chr19:
804036-804208
173
PTBP1_HUMAN
39-96
58
0
-
-
1.5
ENST00000349038
5
ENSE00000892212
chr19:
804292-804438
147
PTBP1_HUMAN
97-145
49
0
-
-
1.6
ENST00000349038
6
ENSE00000892214
chr19:
804532-804702
171
PTBP1_HUMAN
146-202
57
2
A:180-202
B:180-202
23
23
1.7
ENST00000349038
7
ENSE00000892216
chr19:
804829-804939
111
PTBP1_HUMAN
203-239
37
2
A:203-239
B:203-239
37
37
1.8
ENST00000349038
8
ENSE00000892217
chr19:
805013-805187
175
PTBP1_HUMAN
240-298
59
2
A:240-285
B:240-283
46
44
1.10
ENST00000349038
10
ENSE00000464365
chr19:
806408-806556
149
PTBP1_HUMAN
298-347
50
0
-
-
1.11
ENST00000349038
11
ENSE00000892219
chr19:
807869-807902
34
PTBP1_HUMAN
348-359
12
0
-
-
1.12
ENST00000349038
12
ENSE00000768789
chr19:
808360-808452
93
PTBP1_HUMAN
359-390
32
0
-
-
1.13
ENST00000349038
13
ENSE00000768790
chr19:
808546-808762
217
PTBP1_HUMAN
390-462
73
0
-
-
1.14
ENST00000349038
14
ENSE00000768792
chr19:
810543-810620
78
PTBP1_HUMAN
462-488
27
0
-
-
1.15
ENST00000349038
15
ENSE00001155037
chr19:
810694-812327
1634
PTBP1_HUMAN
488-531
44
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3zzya_ (A:)
1b: SCOP_d3zzyb_ (B:)
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(21)
1a
d3zzya_
A:
1b
d3zzyb_
B:
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CATH Domains
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Pfam Domains
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Asym.Unit (45 KB)
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