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Asym. Unit
Info
Asym.Unit (545 KB)
Biol.Unit 1 (265 KB)
Biol.Unit 2 (269 KB)
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(1)
Title
:
NTPDASE1 IN COMPLEX WITH HEPTAMOLYBDATE
Authors
:
M. Zebisch, P. Schaefer, N. Straeter
Date
:
04 Aug 11 (Deposition) - 30 Nov 11 (Release) - 25 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Domain Rotation, Hydrolase, Polyoxometallate, Metal Cluster, Purinergic Signaling
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zebisch, M. Krauss, P. Schafer, N. Strater
Crystallographic Evidence For A Domain Motion In Rat Nucleoside Triphosphate Diphosphohydrolase (Ntpdase) 1.
J. Mol. Biol. V. 415 288 2012
[
close entry info
]
Hetero Components
(4, 37)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
2s: CHLORIDE ION (CLs)
2t: CHLORIDE ION (CLt)
2u: CHLORIDE ION (CLu)
2v: CHLORIDE ION (CLv)
3a: HEPTAMOLYBDATE (MO7a)
3b: HEPTAMOLYBDATE (MO7b)
3c: HEPTAMOLYBDATE (MO7c)
3d: HEPTAMOLYBDATE (MO7d)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
7
Ligand/Ion
ACETIC ACID
2
CL
22
Ligand/Ion
CHLORIDE ION
3
MO7
4
Ligand/Ion
HEPTAMOLYBDATE
4
NA
4
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:215 , SER A:216 , SER A:217
BINDING SITE FOR RESIDUE CL A 501
02
AC2
SOFTWARE
SER A:57 , GLY A:215 , ASP A:258 , GLN A:259
BINDING SITE FOR RESIDUE CL A 502
03
AC3
SOFTWARE
GLY A:56 , SER A:57 , GLY A:90 , ILE A:91 , SER A:92
BINDING SITE FOR RESIDUE CL A 503
04
AC4
SOFTWARE
TYR A:402 , PRO A:403 , THR A:404
BINDING SITE FOR RESIDUE CL A 505
05
AC5
SOFTWARE
MET A:366 , MET A:383 , THR A:387 , GLY A:417 , LEU A:421
BINDING SITE FOR RESIDUE ACY A 511
06
AC6
SOFTWARE
LYS A:406 , GLU A:407 , LYS A:408 , LYS D:406 , GLU D:407 , LYS D:408
BINDING SITE FOR RESIDUE MO7 A 531
07
AC7
SOFTWARE
GLY B:214 , GLY B:215 , SER B:216 , SER B:217
BINDING SITE FOR RESIDUE CL B 501
08
AC8
SOFTWARE
SER B:57 , GLY B:215 , ASP B:258 , GLN B:259
BINDING SITE FOR RESIDUE CL B 502
09
AC9
SOFTWARE
GLY B:56 , SER B:57 , SER B:92
BINDING SITE FOR RESIDUE CL B 503
10
BC1
SOFTWARE
TYR B:402 , PRO B:403 , THR B:404
BINDING SITE FOR RESIDUE CL B 505
11
BC2
SOFTWARE
GLU B:396
BINDING SITE FOR RESIDUE CL B 506
12
BC3
SOFTWARE
MET B:366 , PHE B:369 , MET B:383 , THR B:387 , GLY B:417 , LEU B:421
BINDING SITE FOR RESIDUE ACY B 511
13
BC4
SOFTWARE
PHE B:332 , PHE B:344 , SER B:422 , GLN B:426 , GLY B:427
BINDING SITE FOR RESIDUE ACY B 512
14
BC5
SOFTWARE
CYS B:342 , ALA B:343 , GLN B:426 , GLY B:427 , ASN B:429
BINDING SITE FOR RESIDUE NA B 521
15
BC6
SOFTWARE
LYS B:406 , LYS B:408 , LYS C:406 , GLU C:407 , LYS C:408
BINDING SITE FOR RESIDUE MO7 B 531
16
BC7
SOFTWARE
GLY C:214 , GLY C:215 , SER C:216 , SER C:217
BINDING SITE FOR RESIDUE CL C 501
17
BC8
SOFTWARE
SER C:57 , GLY C:215 , ASP C:258 , GLN C:259
BINDING SITE FOR RESIDUE CL C 502
18
BC9
SOFTWARE
GLY C:56 , SER C:57 , SER C:92 , GLY C:133
BINDING SITE FOR RESIDUE CL C 503
19
CC1
SOFTWARE
TYR C:402 , PRO C:403 , THR C:404
BINDING SITE FOR RESIDUE CL C 505
20
CC2
SOFTWARE
ALA C:231 , PRO C:232 , GLU C:233
BINDING SITE FOR RESIDUE CL C 506
21
CC3
SOFTWARE
MET C:366 , MET C:383 , THR C:387 , GLY C:417 , LEU C:421
BINDING SITE FOR RESIDUE ACY C 511
22
CC4
SOFTWARE
LEU C:329 , PHE C:332 , ASN C:334 , PHE C:344 , SER C:422 , GLN C:426 , GLY C:427
BINDING SITE FOR RESIDUE ACY C 512
23
CC5
SOFTWARE
LEU C:329 , PHE C:332
BINDING SITE FOR RESIDUE NA C 521
24
CC6
SOFTWARE
CYS C:342 , ALA C:343 , GLN C:426 , GLY C:427 , ASN C:429
BINDING SITE FOR RESIDUE NA C 522
25
CC7
SOFTWARE
LYS B:406 , GLU B:407 , LYS B:408 , LYS C:406 , LYS C:408
BINDING SITE FOR RESIDUE MO7 C 531
26
CC8
SOFTWARE
GLY D:214 , GLY D:215 , SER D:216 , SER D:217
BINDING SITE FOR RESIDUE CL D 501
27
CC9
SOFTWARE
SER D:57 , GLY D:215 , GLN D:259
BINDING SITE FOR RESIDUE CL D 502
28
DC1
SOFTWARE
GLY D:56 , SER D:57 , ILE D:91 , SER D:92
BINDING SITE FOR RESIDUE CL D 503
29
DC2
SOFTWARE
TYR D:402 , PRO D:403 , THR D:404
BINDING SITE FOR RESIDUE CL D 505
30
DC3
SOFTWARE
PRO C:232 , ARG D:135 , ARG D:138 , THR D:170
BINDING SITE FOR RESIDUE CL D 506
31
DC4
SOFTWARE
ALA D:231 , PRO D:232 , GLU D:233
BINDING SITE FOR RESIDUE CL D 507
32
DC5
SOFTWARE
GLU D:396
BINDING SITE FOR RESIDUE CL D 508
33
DC6
SOFTWARE
GLY D:354
BINDING SITE FOR RESIDUE CL D 509
34
DC7
SOFTWARE
MET D:366 , PHE D:369 , MET D:383 , THR D:387 , GLY D:417 , ILE D:420
BINDING SITE FOR RESIDUE ACY D 511
35
DC8
SOFTWARE
LEU D:329 , PHE D:332 , ASN D:334 , PHE D:344 , SER D:422 , GLY D:427
BINDING SITE FOR RESIDUE ACY D 512
36
DC9
SOFTWARE
CYS D:342 , ALA D:343 , GLN D:426 , GLY D:427 , ASN D:429
BINDING SITE FOR RESIDUE NA D 521
37
EC1
SOFTWARE
LYS A:406 , GLU A:407 , LYS A:408 , LYS D:406 , GLU D:407 , LYS D:408
BINDING SITE FOR RESIDUE MO7 D 531
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GDA1_CD39_NTPASE (A:169-184,B:169-184,C:169-184,D:16...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GDA1_CD39_NTPASE
PS01238
GDA1/CD39 family of nucleoside phosphatases signature.
ENTP1_RAT
169-184
4
A:169-184
B:169-184
C:169-184
D:169-184
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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)
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Sidechain
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Chain D
Asymmetric Unit 1
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