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3ZWX
Biol. Unit 3
Info
Asym.Unit (702 KB)
Biol.Unit 1 (176 KB)
Biol.Unit 2 (178 KB)
Biol.Unit 3 (179 KB)
Biol.Unit 4 (177 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH 8-BROMO-ADP-RIBOSE
Authors
:
M. Kotaka, R. Graeff, L. H. Zhang, H. C. Lee, Q. Hao
Date
:
03 Aug 11 (Deposition) - 22 Aug 12 (Release) - 22 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Hydrolase, Cd38, Substrate Specificity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kotaka, R. Graeff, Z. Chen, L. H. Zhang, H. C. Lee, Q. Hao
Structural Studies Of Intermediates Along The Cyclization Pathway Of Aplysia Adp-Ribosyl Cyclase.
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: [(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-... (AV1a)
1b: [(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-... (AV1b)
1c: [(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-... (AV1c)
1d: [(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-... (AV1d)
1e: [(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-... (AV1e)
1f: [(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-... (AV1f)
1g: [(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-... (AV1g)
1h: [(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-... (AV1h)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
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No.
Name
Count
Type
Full Name
1
AV1
2
Ligand/Ion
[(2R,3S,4R,5R)-5-(6-AMINO-8-BROMO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL[(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC8 (SOFTWARE)
4: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
PHE E:76 , TRP E:77 , SER E:78 , GLY E:79 , LEU E:97 , ASN E:107 , SER E:108 , SER E:144 , ARG E:170 , SER E:173 , PHE E:174 , PHE E:175 , GLU E:179
BINDING SITE FOR RESIDUE AV1 E1682
2
AC6
SOFTWARE
PHE F:76 , TRP F:77 , SER F:78 , GLY F:79 , TYR F:81 , ASN F:107 , SER F:144 , ARG F:170 , PHE F:174 , PHE F:175 , GLU F:179
BINDING SITE FOR RESIDUE AV1 F1682
3
AC8
SOFTWARE
LYS F:252 , PHE H:76 , TRP H:77 , SER H:78 , GLY H:79 , TYR H:81 , LEU H:97 , ASN H:107 , SER H:144 , ARG H:170 , SER H:173 , PHE H:174 , PHE H:175 , GLU H:179
BINDING SITE FOR RESIDUE AV1 H1682
4
BC2
SOFTWARE
ASN F:242 , PRO F:243 , ASN F:244
BINDING SITE FOR RESIDUE CL F1253
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3zwxa_ (A:)
1b: SCOP_d3zwxb_ (B:)
1c: SCOP_d3zwxc_ (C:)
1d: SCOP_d3zwxd_ (D:)
1e: SCOP_d3zwxe_ (E:)
1f: SCOP_d3zwxf_ (F:)
1g: SCOP_d3zwxg_ (G:)
1h: SCOP_d3zwxh_ (H:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
N-(deoxy)ribosyltransferase-like
(76)
Family
:
ADP ribosyl cyclase-like
(60)
Protein domain
:
automated matches
(12)
California sea hare (Aplysia californica) [TaxId: 6500]
(12)
1a
d3zwxa_
A:
1b
d3zwxb_
B:
1c
d3zwxc_
C:
1d
d3zwxd_
D:
1e
d3zwxe_
E:
1f
d3zwxf_
F:
1g
d3zwxg_
G:
1h
d3zwxh_
H:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (702 KB)
Header - Asym.Unit
Biol.Unit 1 (176 KB)
Header - Biol.Unit 1
Biol.Unit 2 (178 KB)
Header - Biol.Unit 2
Biol.Unit 3 (179 KB)
Header - Biol.Unit 3
Biol.Unit 4 (177 KB)
Header - Biol.Unit 4
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