PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3ZWB
Biol. Unit 2
Info
Asym.Unit (236 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (117 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH 2TRANS-HEXENOYL-COA
Authors
:
P. Kasaragod, W. Schmitz, J. K. Hiltunen, R. K. Wierenga
Date
:
28 Jul 11 (Deposition) - 08 Aug 12 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Oxidation Pathway, Oxidoreductase, Lipid Metabolism, Lyase, Isomerase, Peroxisome, Fatty Acid Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kasaragod, W. Schmitz, J. Kalervo Hiltunen, R. K. Wierenga
The Isomerase And Hydratase Reaction Mechanism Of The Crotonase Active Site Of The Multifunctional Enzyme (Type- 1), As Deduced From Structures Of Complexes With 3S-Hydroxy- Acyl-Coa.
Febs J. V. 280 3160 2013
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
3a: (2E)-HEXENOYL-COA (TC6a)
3b: (2E)-HEXENOYL-COA (TC6b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
-1
Ligand/Ion
GLYCEROL
2
SO4
3
Ligand/Ion
SULFATE ION
3
TC6
1
Ligand/Ion
(2E)-HEXENOYL-COA
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
PRO A:20 , VAL A:21 , ALA A:23 , ALA A:59 , GLY A:60 , ALA A:61 , ASP A:62 , ILE A:63 , LEU A:98 , GLY A:100 , GLU A:103 , GLY A:131 , TYR A:156 , LYS A:275 , HOH A:2006 , HOH A:2009 , LYS B:249
BINDING SITE FOR RESIDUE TC6 A1723
2
AC5
SOFTWARE
SER B:521 , ARG B:533
BINDING SITE FOR RESIDUE SO4 B1719
3
AC6
SOFTWARE
LEU B:73 , ALA B:74 , LEU B:75 , GLY B:76 , SER B:77 , ARG B:133
BINDING SITE FOR RESIDUE SO4 B1720
4
AC7
SOFTWARE
PRO B:20 , VAL B:21 , ALA B:59 , GLY B:60 , ALA B:61 , ASP B:62 , ILE B:63 , PHE B:66 , LEU B:98 , GLY B:100 , GLU B:103 , PRO B:122 , GLY B:131 , ALA B:132 , TYR B:156 , PHE B:255 , LYS B:275 , LYS B:279 , LYS B:463 , HOH B:2013
BINDING SITE FOR RESIDUE TC6 B1721
5
AC8
SOFTWARE
ILE B:192 , GLU B:193 , ARG B:196
BINDING SITE FOR RESIDUE SO4 B1722
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (B:90-110)
2: 3HCDH (B:474-498)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
ECHP_RAT
90-110
1
-
B:90-110
2
3HCDH
PS00067
3-hydroxyacyl-CoA dehydrogenase signature.
ECHP_RAT
474-498
1
-
B:474-498
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (236 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
Biol.Unit 2 (117 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3ZWB
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
