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3ZW9
Asym. Unit
Info
Asym.Unit (239 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (118 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH (2S,3S)-3-HYDROXY-2-METHYLBUTANOYL-COA
Authors
:
P. Kasaragod, W. Schmitz, J. K. Hiltunen, R. K. Wierenga
Date
:
28 Jul 11 (Deposition) - 08 Aug 12 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Oxidation Pathway, Oxidoreductase, Lipid Metabolism, Lyase, Isomerase, Peroxisome, Fatty Acid Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kasaragod, W. Schmitz, J. Kalervo Hiltunen, R. K. Wierenga
The Isomerase And Hydratase Reaction Mechanism Of The Crotonase Active Site Of The Multifunctional Enzyme (Type- 1), As Deduced From Structures Of Complexes With 3S-Hydroxy- Acyl-Coa.
Febs J. V. 280 3160 2013
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
3a: (2S,3S)-3-HYDROXY-2-METHYLBUTANOYL... (T1Ga)
3b: (2S,3S)-3-HYDROXY-2-METHYLBUTANOYL... (T1Gb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
SO4
3
Ligand/Ion
SULFATE ION
3
T1G
2
Ligand/Ion
(2S,3S)-3-HYDROXY-2-METHYLBUTANOYL-COA
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:302 , GLY A:303 , GLY A:305 , THR A:306 , MET A:307 , VAL A:325 , GLU A:326 , SER A:327 , GLN A:331 , ALA A:380 , VAL A:381 , PHE A:382 , GLU A:383 , LYS A:388 , ASN A:408 , SER A:410 , HIS A:431 , PHE A:432
BINDING SITE FOR RESIDUE NAD A1721
2
AC2
SOFTWARE
VAL A:21 , ALA A:23 , ALA A:59 , GLY A:60 , ALA A:61 , ASP A:62 , ILE A:63 , PHE A:66 , LEU A:98 , GLY A:99 , GLY A:100 , GLU A:103 , PRO A:122 , GLU A:123 , ILE A:128 , PRO A:130 , GLY A:131 , TYR A:156 , LYS B:249
BINDING SITE FOR RESIDUE T1G A1722
3
AC3
SOFTWARE
PRO A:191 , ILE A:192 , GLU A:193 , ARG A:196
BINDING SITE FOR RESIDUE SO4 A1723
4
AC4
SOFTWARE
THR A:597 , LEU B:302 , GLY B:303 , GLY B:305 , THR B:306 , MET B:307 , VAL B:325 , GLU B:326 , SER B:327 , GLN B:331 , ALA B:380 , VAL B:381 , PHE B:382 , GLU B:383 , LYS B:388 , VAL B:391 , ASN B:408 , SER B:410 , HIS B:431 , HOH B:2028
BINDING SITE FOR RESIDUE NAD B1719
5
AC5
SOFTWARE
VAL B:21 , ALA B:59 , GLY B:60 , ALA B:61 , ASP B:62 , ILE B:63 , PHE B:66 , LEU B:98 , GLY B:100 , GLU B:103 , PRO B:122 , GLU B:123 , LEU B:129 , PRO B:130 , GLY B:131 , TYR B:156 , LYS B:275
BINDING SITE FOR RESIDUE T1G B1721
6
AC6
SOFTWARE
ARG B:440 , HIS B:651
BINDING SITE FOR RESIDUE SO4 B1720
7
AC7
SOFTWARE
PRO B:191 , ILE B:192 , GLU B:193 , ARG B:196
BINDING SITE FOR RESIDUE SO4 B1722
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:90-110,B:90-110)
2: 3HCDH (A:474-498,B:474-498)
;
View:
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
ECHP_RAT
90-110
2
A:90-110
B:90-110
2
3HCDH
PS00067
3-hydroxyacyl-CoA dehydrogenase signature.
ECHP_RAT
474-498
2
A:474-498
B:474-498
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:1-25 | B:1-25)
Exon 1.2 (A:25-60 | B:25-60)
Exon 1.3 (A:60-116 | B:60-116)
Exon 1.4 (A:117-154 | B:117-154)
Exon 1.5 (A:154-189 | B:154-189)
Exon 1.6 (A:189-303 | B:189-303)
Exon 1.7 (A:303-720 | B:303-718)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000002410
1
ENSRNOE00000016807
chr11:
81474172-81474255
84
ECHP_RAT
1-25
25
2
A:1-25
B:1-25
25
25
1.2
ENSRNOT00000002410
2
ENSRNOE00000230475
chr11:
81484849-81484952
104
ECHP_RAT
25-60
36
2
A:25-60
B:25-60
36
36
1.3
ENSRNOT00000002410
3
ENSRNOE00000230472
chr11:
81488787-81488956
170
ECHP_RAT
60-116
57
2
A:60-116
B:60-116
57
57
1.4
ENSRNOT00000002410
4
ENSRNOE00000230466
chr11:
81490895-81491006
112
ECHP_RAT
117-154
38
2
A:117-154
B:117-154
38
38
1.5
ENSRNOT00000002410
5
ENSRNOE00000016816
chr11:
81494173-81494277
105
ECHP_RAT
154-189
36
2
A:154-189
B:154-189
36
36
1.6
ENSRNOT00000002410
6
ENSRNOE00000016818
chr11:
81502243-81502584
342
ECHP_RAT
189-303
115
2
A:189-303
B:189-303
115
115
1.7
ENSRNOT00000002410
7
ENSRNOE00000016820
chr11:
81505473-81507660
2188
ECHP_RAT
303-722
420
2
A:303-720
B:303-718
418
416
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (239 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
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