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3ZV6
Biol. Unit 1
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Asym.Unit (179 KB)
Biol.Unit 1 (341 KB)
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Title
:
CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE (BPHB) FROM PANDORAEA PNOMENUSA STRAIN B-356 COMPLEX WITH CO-ENZYME NAD AND PRODUCT ANALOG 4,4'-DIHYDROXYBIPHENYL
Authors
:
S. Dhindwal, D. N. Patil, P. Kumar
Date
:
23 Jul 11 (Deposition) - 31 Aug 11 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Oxidoreductase, Short Chain Dehydrogenase/Oxidoreductase, Sdr
(Keyword Search:
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Reference
:
S. Dhindwal, D. N. Patil, M. Mohammadi, M. Sylvestre, S. Tomar, P. Kuma
Biochemical Studies And Ligand-Bound Structures Of Biphenyl Dehydrogenase From Pandoraea Pnomenusa Strain B-356 Reveal Basis For Broad Specificity Of The Enzyme.
J. Biol. Chem. V. 286 37011 2011
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 4,4'-DIHYDROXYBIPHENYL (4HBa)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
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No.
Name
Count
Type
Full Name
1
4HB
2
Ligand/Ion
4,4'-DIHYDROXYBIPHENYL
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(3, 3)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:12 , SER A:15 , GLY A:16 , LEU A:17 , ASP A:36 , LYS A:37 , GLY A:58 , ASP A:59 , VAL A:60 , ASN A:86 , GLY A:88 , TYR A:119 , THR A:140 , ILE A:141 , SER A:142 , TYR A:155 , LYS A:159 , PRO A:184 , MET A:187 , THR A:189 , ASP A:190 , LEU A:191 , ILE A:204 , LEU A:209 , 4HB A:1277 , HOH A:2010 , HOH A:2021 , HOH A:2023
BINDING SITE FOR RESIDUE NAD A1276
2
AC2
SOFTWARE
GLY B:12 , SER B:15 , GLY B:16 , LEU B:17 , GLY B:18 , ASP B:36 , LYS B:37 , GLY B:58 , ASP B:59 , VAL B:60 , ASN B:86 , ALA B:87 , GLY B:88 , TYR B:119 , THR B:140 , ILE B:141 , SER B:142 , TYR B:155 , LYS B:159 , PRO B:184 , MET B:187 , THR B:189 , ASP B:190 , LEU B:191 , ARG B:192 , HOH B:2066
BINDING SITE FOR RESIDUE NAD B1276
3
AC3
SOFTWARE
TRP A:90 , SER A:142 , ASN A:143 , GLY A:150 , TYR A:155 , LEU A:209 , LEU A:213 , PHE A:260 , NAD A:1276
BINDING SITE FOR RESIDUE 4HB A1277
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PROSITE Patterns/Profiles
(1, 4)
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1: ADH_SHORT (A:142-170,B:142-170)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
BPHB_COMTE
142-170
4
A:142-170
B:142-170
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SCOP Domains
(1, 2)
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1a: SCOP_d3zv6a_ (A:)
1b: SCOP_d3zv6b_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Comamonas testosteroni [TaxId: 285]
(3)
1a
d3zv6a_
A:
1b
d3zv6b_
B:
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CATH Domains
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Asym.Unit (179 KB)
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