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3ZUM
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
PHOTOSYNTHETIC REACTION CENTRE MUTANT WITH PHE L146 REPLACED WITH ALA
Authors
:
K. Gibasiewicz, M. Pajzderska, J. A. Potter, P. K. Fyfe, A. Dobek, K. Bre M. R. Jones
Date
:
19 Jul 11 (Deposition) - 16 Nov 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Photosynthesis, Electron Transfer, Primary Charge Separation, Charge Recombination, Transient Absorption Spectroscopy
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. Gibasiewicz, M. Pajzderska, J. A. Potter, P. K. Fyfe, A. Dobek, K. Brettel, M. R. Jones
Mechanism Of Recombination Of The P(+)H(A)(-) Radical Pair In Mutant Rhodobacter Sphaeroides Reaction Centers With Modified Free Energy Gaps Between P(+)B(A)(-) And P(+)H(A)(-).
J Phys Chem B V. 115 13037 2011
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Hetero Components
(7, 19)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
2a: BACTERIOPHEOPHYTIN A (BPHa)
2b: BACTERIOPHEOPHYTIN A (BPHb)
3a: FE (III) ION (FEa)
4a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
4b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
4c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
4d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
4e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
4f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
4g: LAURYL DIMETHYLAMINE-N-OXIDE (LDAg)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
6a: SPEROIDENONE (SPNa)
7a: UBIQUINONE-10 (U10a)
7b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
FE
1
Ligand/Ion
FE (III) ION
4
LDA
7
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
5
PO4
2
Ligand/Ion
PHOSPHATE ION
6
SPN
1
Ligand/Ion
SPEROIDENONE
7
U10
2
Ligand/Ion
UBIQUINONE-10
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG H:177 , PHE H:178 , GLN H:194 , GLU H:230 , CYS H:234 , SER M:227 , GLY M:230 , ARG M:233
BINDING SITE FOR RESIDUE PO4 H1246
02
AC2
SOFTWARE
LDA L:702 , BCL L:1283 , PRO M:200 , PHE M:208 , MET M:272
BINDING SITE FOR RESIDUE LDA L 701
03
AC3
SOFTWARE
GLN H:32 , TYR H:40 , PHE H:56 , LDA L:701 , HOH L:2048 , PHE M:258
BINDING SITE FOR RESIDUE LDA L 702
04
AC4
SOFTWARE
GLY M:257
BINDING SITE FOR RESIDUE LDA L 703
05
AC5
SOFTWARE
VAL L:220 , GLY M:31
BINDING SITE FOR RESIDUE LDA L 704
06
AC6
SOFTWARE
ALA H:25
BINDING SITE FOR RESIDUE LDA L 706
07
AC7
SOFTWARE
PHE L:97 , ALA L:124 , ALA L:127 , VAL L:157 , SER L:158 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , SER L:244 , ALA L:245 , CYS L:247 , MET L:248 , BCL L:1283 , BPH L:1284 , TYR M:210 , BCL M:1302 , BCL M:1303
BINDING SITE FOR RESIDUE BCL L1282
08
AC8
SOFTWARE
TYR L:128 , LEU L:131 , HIS L:153 , LEU L:154 , LDA L:701 , BCL L:1282 , BPH L:1284 , HOH L:2049 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , GLY M:211 , LEU M:214
BINDING SITE FOR RESIDUE BCL L1283
09
AC9
SOFTWARE
ALA L:93 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , ALA L:124 , HIS L:153 , VAL L:241 , BCL L:1282 , BCL L:1283 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256
BINDING SITE FOR RESIDUE BPH L1284
10
BC1
SOFTWARE
PHE L:179 , THR L:182 , HIS L:190 , LEU L:193 , VAL L:194 , GLU L:212 , ASP L:213 , PHE L:216 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , BCL M:1302
BINDING SITE FOR RESIDUE U10 L1285
11
BC2
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , BCL L:1282 , U10 L:1285 , HOH L:2031 , MET M:122 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:1303 , BPH M:1305 , SPN M:1307
BINDING SITE FOR RESIDUE BCL M1302
12
BC3
SOFTWARE
PHE L:181 , BCL L:1282 , ALA M:153 , LEU M:156 , LEU M:160 , THR M:186 , ASN M:187 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , LEU M:209 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:1302 , BPH M:1305
BINDING SITE FOR RESIDUE BCL M1303
13
BC4
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE M1304
14
BC5
SOFTWARE
PHE L:181 , ALA L:184 , LEU L:185 , LEU L:189 , LEU L:219 , GLY M:63 , ALA M:125 , VAL M:126 , TRP M:129 , THR M:133 , THR M:146 , PHE M:150 , ALA M:153 , THR M:277 , BCL M:1302 , BCL M:1303
BINDING SITE FOR RESIDUE BPH M1305
15
BC6
SOFTWARE
ASN M:28 , GLY M:53 , SER M:54
BINDING SITE FOR RESIDUE PO4 M1306
16
BC7
SOFTWARE
PHE M:67 , PHE M:68 , TRP M:75 , SER M:119 , MET M:122 , TRP M:157 , GLY M:161 , TRP M:171 , ILE M:179 , HIS M:182 , BCL M:1302
BINDING SITE FOR RESIDUE SPN M1307
17
BC8
SOFTWARE
PHE L:29 , GLY L:35 , TRP L:100 , MET M:218 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , ASN M:259 , ALA M:260 , ILE M:265 , TRP M:268
BINDING SITE FOR RESIDUE U10 M1308
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (L:166-192,M:195-221)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOSH
167-193
1
L:166-192
RCEM_RHOSH
196-222
1
M:195-221
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d3zumh2 (H:36-245)
2a: SCOP_d3zuml_ (L:)
2b: SCOP_d3zumm_ (M:)
3a: SCOP_d3zumh1 (H:11-35)
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Protein Domains
(
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(
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Organisms
(
)
(
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Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d3zumh2
H:36-245
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
automated matches
(44)
Rhodobacter sphaeroides [TaxId: 1063]
(31)
2a
d3zuml_
L:
2b
d3zumm_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
3a
d3zumh1
H:11-35
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain H
Chain L
Chain M
Asymmetric Unit 1
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