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3ZS3
Asym. Unit
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Asym.Unit (42 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF MAL D 2, THE THAUMATIN LIKE FOOD ALLERGEN FROM APPLE
Authors
:
J. Kopec, U. Smole, T. Pavkov, H. Breiteneder, W. Keller
Date
:
22 Jun 11 (Deposition) - 11 Jul 12 (Release) - 11 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Allergen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Kopec, U. Smole, T. Pavkov, H. Breiteneder, W. Keller
High Resolution Structure Of Mal D 2, The Thaumatin Like Food Allergen From Apple
To Be Published
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: ACETIC ACID (ACYa)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
4a: SUCCINIC ACID (SINa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
ACY
1
Ligand/Ion
ACETIC ACID
3
FMT
3
Ligand/Ion
FORMIC ACID
4
SIN
1
Ligand/Ion
SUCCINIC ACID
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:27 , LEU A:28 , THR A:29 , GLY A:30 , ALA A:78 , HOH A:2027 , HOH A:2033 , HOH A:2073
BINDING SITE FOR RESIDUE SIN A1223
2
AC2
SOFTWARE
GLU A:92 , THR A:94 , TYR A:103 , TYR A:104 , ASP A:105 , HOH A:2049 , HOH A:2079
BINDING SITE FOR RESIDUE ACT A1224
3
AC3
SOFTWARE
LYS A:167 , THR A:183 , GLU A:184 , HOH A:2119 , HOH A:2145
BINDING SITE FOR RESIDUE ACT A1225
4
AC4
SOFTWARE
PRO A:194 , GLN A:195 , ALA A:196 , ASN A:205 , PHE A:208 , HOH A:2129 , HOH A:2138
BINDING SITE FOR RESIDUE ACT A1226
5
AC5
SOFTWARE
THR A:55 , ARG A:56 , ASN A:113 , ILE A:154 , HOH A:2104
BINDING SITE FOR RESIDUE ACT A1227
6
AC6
SOFTWARE
LYS A:204 , ASN A:205 , SER A:206
BINDING SITE FOR RESIDUE FMT A1228
7
AC7
SOFTWARE
PRO A:24 , GLN A:25 , PRO A:44 , LYS A:138 , HOH A:2026 , HOH A:2030 , HOH A:2105
BINDING SITE FOR RESIDUE ACY A1229
8
AC8
SOFTWARE
LYS A:157 , ALA A:162 , HOH A:2113
BINDING SITE FOR RESIDUE FMT A1230
9
AC9
SOFTWARE
VAL A:77 , HOH A:2033 , HOH A:2034 , HOH A:2035 , HOH A:2072
BINDING SITE FOR RESIDUE FMT A1231
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: THAUMATIN_1 (A:63-79)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THAUMATIN_1
PS00316
Thaumatin family signature.
TP1A_MALDO
87-103
1
A:63-79
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3zs3a_ (A:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Osmotin, thaumatin-like protein
(82)
Superfamily
:
Osmotin, thaumatin-like protein
(82)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Malus x [TaxId: 3750]
(1)
1a
d3zs3a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (42 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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