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3ZRC
Asym. Unit
Info
Asym.Unit (218 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (57 KB)
Biol.Unit 4 (57 KB)
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(1)
Title
:
PVHL54-213-ELOB-ELOC COMPLEX (4R)-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]-N-[4-(1,3-OXAZOL-5-YL)BENZYL]-L-PROLINAMIDE BOUND
Authors
:
I. Van Molle, D. L. Buckley, C. M. Crews, A. Ciulli
Date
:
15 Jun 11 (Deposition) - 07 Mar 12 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Transcription, Tumour Supressor Protein, Chronic Aneamia Tre E3 Treatment, E3 Ubiquitin Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. L. Buckley, I. Van Molle, P. C. Gareiss, H. S. Tae, J. Michel, D. J. Noblin, W. L. Jorgensen, A. Ciulli, C. M. Crews
Targeting The Von Hippel-Lindau E3 Ubiquitin Ligase Using Small Molecules To Disrupt The Vhl/Hif-1Alpha Interaction
J. Am. Chem. Soc. V. 134 4465 2012
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: (4R)-4-HYDROXY-1-[(3-METHYLISOXAZO... (L8Ba)
1b: (4R)-4-HYDROXY-1-[(3-METHYLISOXAZO... (L8Bb)
1c: (4R)-4-HYDROXY-1-[(3-METHYLISOXAZO... (L8Bc)
1d: (4R)-4-HYDROXY-1-[(3-METHYLISOXAZO... (L8Bd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
L8B
4
Ligand/Ion
(4R)-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]-N-[4-(1,3-OXAZOL-5-YL)BENZYL]-L-PROLINAMIDE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (AUTHOR)
2: AC2 (AUTHOR)
3: AC3 (AUTHOR)
4: AC4 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
AUTHOR
TRP C:88 , PHE C:91 , TYR C:98 , PRO C:99 , ARG C:107 , ILE C:109 , HIS C:110 , SER C:111 , TYR C:112 , HIS C:115 , TRP C:117
BINDING SITE FOR RESIDUE L8B C1205
2
AC2
AUTHOR
TRP F:88 , TYR F:98 , PRO F:99 , LEU F:101 , ILE F:109 , HIS F:110 , SER F:111 , TYR F:112 , HIS F:115 , TRP F:117
BINDING SITE FOR RESIDUE L8B F1205
3
AC3
AUTHOR
ASN I:67 , TRP I:88 , PHE I:91 , TYR I:98 , PRO I:99 , ARG I:107 , ILE I:109 , HIS I:110 , SER I:111 , TYR I:112 , HIS I:115 , TRP I:117
BINDING SITE FOR RESIDUE L8B I1207
4
AC4
AUTHOR
PRO L:86 , TRP L:88 , PHE L:91 , TYR L:98 , PRO L:99 , ARG L:107 , ILE L:109 , HIS L:110 , SER L:111 , TYR L:112 , HIS L:115 , TRP L:117 , HOH L:2001
BINDING SITE FOR RESIDUE L8B L1205
[
close Site info
]
SAPs(SNPs)/Variants
(120, 480)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_034987 (L63P, chain C/F/I/L, )
002: VAR_034988 (R64P, chain C/F/I/L, )
003: VAR_034989 (S65A, chain C/F/I/L, )
004: VAR_005672 (S65L, chain C/F/I/L, )
005: VAR_005673 (S65W, chain C/F/I/L, )
006: VAR_005675 (S68W, chain C/F/I/L, )
007: VAR_005676 (E70K, chain C/F/I/L, )
008: VAR_005677 (V74G, chain C/F/I/L, )
009: VAR_005679 (F76I, chain C/F/I/L, )
010: VAR_005680 (F76L, chain C/F/I/L, )
011: VAR_005681 (F76S, chain C/F/I/L, )
012: VAR_005682 (N78H, chain C/F/I/L, )
013: VAR_005683 (N78S, chain C/F/I/L, )
014: VAR_005684 (N78T, chain C/F/I/L, )
015: VAR_005685 (R79P, chain C/F/I/L, )
016: VAR_005686 (S80I, chain C/F/I/L, )
017: VAR_005688 (S80N, chain C/F/I/L, )
018: VAR_005687 (S80R, chain C/F/I/L, )
019: VAR_005689 (P81S, chain C/F/I/L, )
020: VAR_005690 (R82P, chain C/F/I/L, )
021: VAR_005692 (V84L, chain C/F/I/L, )
022: VAR_005693 (P86A, chain C/F/I/L, )
023: VAR_008097 (P86H, chain C/F/I/L, )
024: VAR_005694 (P86L, chain C/F/I/L, )
025: VAR_005695 (P86R, chain C/F/I/L, )
026: VAR_005696 (P86S, chain C/F/I/L, )
027: VAR_005697 (W88R, chain C/F/I/L, )
028: VAR_005698 (W88S, chain C/F/I/L, )
029: VAR_005699 (L89H, chain C/F/I/L, )
030: VAR_005700 (L89P, chain C/F/I/L, )
031: VAR_005701 (F91L, chain C/F/I/L, )
032: VAR_005703 (G93C, chain C/F/I/L, )
033: VAR_005704 (G93D, chain C/F/I/L, )
034: VAR_005705 (G93S, chain C/F/I/L, )
035: VAR_005706 (Q96P, chain C/F/I/L, )
036: VAR_005707 (Y98H, chain C/F/I/L, )
037: VAR_005708 (L101G, chain C/F/I/L, )
038: VAR_005709 (L101R, chain C/F/I/L, )
039: VAR_005710 (G104A, chain C/F/I/L, )
040: VAR_005711 (T105P, chain C/F/I/L, )
041: VAR_005712 (G106D, chain C/F/I/L, )
042: VAR_034991 (R107G, chain C/F/I/L, )
043: VAR_005713 (R107P, chain C/F/I/L, )
044: VAR_055087 (H110Y, chain C/F/I/L, )
045: VAR_005714 (S111C, chain C/F/I/L, )
046: VAR_005715 (S111N, chain C/F/I/L, )
047: VAR_005716 (S111R, chain C/F/I/L, )
048: VAR_005717 (Y112H, chain C/F/I/L, )
049: VAR_034992 (Y112N, chain C/F/I/L, )
050: VAR_005718 (G114C, chain C/F/I/L, )
051: VAR_005719 (G114R, chain C/F/I/L, )
052: VAR_005720 (G114S, chain C/F/I/L, )
053: VAR_005723 (H115Q, chain C/F/I/L, )
054: VAR_008098 (H115R, chain C/F/I/L, )
055: VAR_005722 (H115Y, chain C/F/I/L, )
056: VAR_005724 (L116V, chain C/F/I/L, )
057: VAR_005725 (W117C, chain C/F/I/L, )
058: VAR_005726 (L118P, chain C/F/I/L, )
059: VAR_005727 (L118R, chain C/F/I/L, )
060: VAR_005728 (F119L, chain C/F/I/L, )
061: VAR_005729 (F119S, chain C/F/I/L, )
062: VAR_005730 (D121G, chain C/F/I/L, )
063: VAR_034993 (A122I, chain C/F/I/L, )
064: VAR_034994 (D126Y, chain C/F/I/L, )
065: VAR_005731 (L128F, chain C/F/I/L, )
066: VAR_005733 (V130L, chain C/F/I/L, )
067: VAR_005734 (N131K, chain C/F/I/L, )
068: VAR_005735 (N131T, chain C/F/I/L, )
069: VAR_034995 (L135F, chain C/F/I/L, )
070: VAR_005737 (F136C, chain C/F/I/L, )
071: VAR_005736 (F136S, chain C/F/I/L, )
072: VAR_008099 (F136Y, chain C/F/I/L, )
073: VAR_005738 (D143E, chain C/F/I/L, )
074: VAR_008100 (Q145H, chain C/F/I/L, )
075: VAR_034996 (I147T, chain C/F/I/L, )
076: VAR_005740 (A149T, chain C/F/I/L, )
077: VAR_005741 (P154L, chain C/F/I/L, )
078: VAR_005742 (V155G, chain C/F/I/L, )
079: VAR_008101 (V155M, chain C/F/I/L, )
080: VAR_005743 (Y156C, chain C/F/I/L, )
081: VAR_005744 (Y156D, chain C/F/I/L, )
082: VAR_034997 (Y156N, chain C/F/I/L, )
083: VAR_005746 (T157I, chain C/F/I/L, )
084: VAR_005748 (L158P, chain C/F/I/L, )
085: VAR_005749 (L158V, chain C/F/I/L, )
086: VAR_005750 (K159E, chain C/F/I/L, )
087: VAR_005753 (R161G, chain C/F/I/L, )
088: VAR_005752 (R161P, chain C/F/I/L, )
089: VAR_005751 (R161Q, chain C/F/I/L, )
090: VAR_005754 (C162F, chain C/F/I/L, )
091: VAR_005755 (C162R, chain C/F/I/L, )
092: VAR_005756 (C162W, chain C/F/I/L, )
093: VAR_005757 (C162Y, chain C/F/I/L, )
094: VAR_034998 (L163P, chain C/F/I/L, )
095: VAR_008102 (Q164H, chain C/F/I/L, )
096: VAR_005758 (Q164R, chain C/F/I/L, )
097: VAR_008103 (V166D, chain C/F/I/L, )
098: VAR_005759 (V166F, chain C/F/I/L, )
099: VAR_005760 (R167G, chain C/F/I/L, )
100: VAR_005761 (R167Q, chain C/F/I/L, )
101: VAR_005762 (R167W, chain C/F/I/L, )
102: VAR_005763 (V170D, chain C/F/I/L, )
103: VAR_005764 (V170F, chain C/F/I/L, )
104: VAR_005765 (V170G, chain C/F/I/L, )
105: VAR_005766 (Y175D, chain C/F/I/L, )
106: VAR_008104 (R176W, chain C/F/I/L, )
107: VAR_005768 (L178P, chain C/F/I/L, )
108: VAR_005769 (L178Q, chain C/F/I/L, )
109: VAR_005770 (I180V, chain C/F/I/L, )
110: VAR_005772 (L184P, chain C/F/I/L, )
111: VAR_005771 (L184R, chain C/F/I/L, )
112: VAR_005773 (E186K, chain C/F/I/L, )
113: VAR_005775 (L188P, chain C/F/I/L, )
114: VAR_005776 (L188Q, chain C/F/I/L, )
115: VAR_005777 (L188V, chain C/F/I/L, )
116: VAR_034999 (H191D, chain C/F/I/L, )
117: VAR_035000 (P192S, chain C/F/I/L, )
118: VAR_035001 (L198Q, chain C/F/I/L, )
119: VAR_005778 (L198R, chain C/F/I/L, )
120: VAR_005779 (R200W, chain C/F/I/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_034987
L
63
P
VHL_HUMAN
Disease (PCC)
---
C/F/I/L
L
63
P
002
UniProt
VAR_034988
R
64
P
VHL_HUMAN
Disease (PCC)
---
C/F/I/L
R
64
P
003
UniProt
VAR_034989
S
65
A
VHL_HUMAN
Disease (PCC)
---
C/F/I/L
S
65
A
004
UniProt
VAR_005672
S
65
L
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
S
65
L
005
UniProt
VAR_005673
S
65
W
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
S
65
W
006
UniProt
VAR_005675
S
68
W
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
S
68
W
007
UniProt
VAR_005676
E
70
K
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
E
70
K
008
UniProt
VAR_005677
V
74
G
VHL_HUMAN
Disease (VHLD)
5030803
C/F/I/L
V
74
G
009
UniProt
VAR_005679
F
76
I
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
F
76
I
010
UniProt
VAR_005680
F
76
L
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
F
76
L
011
UniProt
VAR_005681
F
76
S
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
F
76
S
012
UniProt
VAR_005682
N
78
H
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
N
78
H
013
UniProt
VAR_005683
N
78
S
VHL_HUMAN
Disease (VHLD)
5030804
C/F/I/L
N
78
S
014
UniProt
VAR_005684
N
78
T
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
N
78
T
015
UniProt
VAR_005685
R
79
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
R
79
P
016
UniProt
VAR_005686
S
80
I
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
S
80
I
017
UniProt
VAR_005688
S
80
N
VHL_HUMAN
Disease (VHLD)
5030805
C/F/I/L
S
80
N
018
UniProt
VAR_005687
S
80
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
S
80
R
019
UniProt
VAR_005689
P
81
S
VHL_HUMAN
Disease (VHLD)
5030806
C/F/I/L
P
81
S
020
UniProt
VAR_005690
R
82
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
R
82
P
021
UniProt
VAR_005692
V
84
L
VHL_HUMAN
Disease (VHLD)
5030827
C/F/I/L
V
84
L
022
UniProt
VAR_005693
P
86
A
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
P
86
A
023
UniProt
VAR_008097
P
86
H
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
P
86
H
024
UniProt
VAR_005694
P
86
L
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
P
86
L
025
UniProt
VAR_005695
P
86
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
P
86
R
026
UniProt
VAR_005696
P
86
S
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
P
86
S
027
UniProt
VAR_005697
W
88
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
W
88
R
028
UniProt
VAR_005698
W
88
S
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
W
88
S
029
UniProt
VAR_005699
L
89
H
VHL_HUMAN
Unclassified
---
C/F/I/L
L
89
H
030
UniProt
VAR_005700
L
89
P
VHL_HUMAN
Disease (VHLD)
5030807
C/F/I/L
L
89
P
031
UniProt
VAR_005701
F
91
L
VHL_HUMAN
Unclassified
---
C/F/I/L
F
91
L
032
UniProt
VAR_005703
G
93
C
VHL_HUMAN
Disease (VHLD)
5030808
C/F/I/L
G
93
C
033
UniProt
VAR_005704
G
93
D
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
G
93
D
034
UniProt
VAR_005705
G
93
S
VHL_HUMAN
Disease (VHLD)
5030808
C/F/I/L
G
93
S
035
UniProt
VAR_005706
Q
96
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Q
96
P
036
UniProt
VAR_005707
Y
98
H
VHL_HUMAN
Disease (VHLD)
5030809
C/F/I/L
Y
98
H
037
UniProt
VAR_005708
L
101
G
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
101
G
038
UniProt
VAR_005709
L
101
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
101
R
039
UniProt
VAR_005710
G
104
A
VHL_HUMAN
Unclassified
---
C/F/I/L
G
104
A
040
UniProt
VAR_005711
T
105
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
T
105
P
041
UniProt
VAR_005712
G
106
D
VHL_HUMAN
Unclassified
---
C/F/I/L
G
106
D
042
UniProt
VAR_034991
R
107
G
VHL_HUMAN
Disease (PCC)
---
C/F/I/L
R
107
G
043
UniProt
VAR_005713
R
107
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
R
107
P
044
UniProt
VAR_055087
H
110
Y
VHL_HUMAN
Polymorphism
17855706
C/F/I/L
H
110
Y
045
UniProt
VAR_005714
S
111
C
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
S
111
C
046
UniProt
VAR_005715
S
111
N
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
S
111
N
047
UniProt
VAR_005716
S
111
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
S
111
R
048
UniProt
VAR_005717
Y
112
H
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Y
112
H
049
UniProt
VAR_034992
Y
112
N
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Y
112
N
050
UniProt
VAR_005718
G
114
C
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
G
114
C
051
UniProt
VAR_005719
G
114
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
G
114
R
052
UniProt
VAR_005720
G
114
S
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
G
114
S
053
UniProt
VAR_005723
H
115
Q
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
H
115
Q
054
UniProt
VAR_008098
H
115
R
VHL_HUMAN
Disease (VHLD)
5030812
C/F/I/L
H
115
R
055
UniProt
VAR_005722
H
115
Y
VHL_HUMAN
Disease (VHLD)
5030811
C/F/I/L
H
115
Y
056
UniProt
VAR_005724
L
116
V
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
116
V
057
UniProt
VAR_005725
W
117
C
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
W
117
C
058
UniProt
VAR_005726
L
118
P
VHL_HUMAN
Disease (VHLD)
5030830
C/F/I/L
L
118
P
059
UniProt
VAR_005727
L
118
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
118
R
060
UniProt
VAR_005728
F
119
L
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
F
119
L
061
UniProt
VAR_005729
F
119
S
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
F
119
S
062
UniProt
VAR_005730
D
121
G
VHL_HUMAN
Disease (VHLD)
5030832
C/F/I/L
D
121
G
063
UniProt
VAR_034993
A
122
I
VHL_HUMAN
Disease (PCC)
---
C/F/I/L
A
122
I
064
UniProt
VAR_034994
D
126
Y
VHL_HUMAN
Disease (ECYT2)
---
C/F/I/L
D
126
Y
065
UniProt
VAR_005731
L
128
F
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
128
F
066
UniProt
VAR_005733
V
130
L
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
V
130
L
067
UniProt
VAR_005734
N
131
K
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
N
131
K
068
UniProt
VAR_005735
N
131
T
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
N
131
T
069
UniProt
VAR_034995
L
135
F
VHL_HUMAN
Unclassified
---
C/F/I/L
L
135
F
070
UniProt
VAR_005737
F
136
C
VHL_HUMAN
Disease (VHLD)
5030833
C/F/I/L
F
136
C
071
UniProt
VAR_005736
F
136
S
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
F
136
S
072
UniProt
VAR_008099
F
136
Y
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
F
136
Y
073
UniProt
VAR_005738
D
143
E
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
D
143
E
074
UniProt
VAR_008100
Q
145
H
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Q
145
H
075
UniProt
VAR_034996
I
147
T
VHL_HUMAN
Disease (PCC)
---
C/F/I/L
I
147
T
076
UniProt
VAR_005740
A
149
T
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
A
149
T
077
UniProt
VAR_005741
P
154
L
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
P
154
L
078
UniProt
VAR_005742
V
155
G
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
V
155
G
079
UniProt
VAR_008101
V
155
M
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
V
155
M
080
UniProt
VAR_005743
Y
156
C
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Y
156
C
081
UniProt
VAR_005744
Y
156
D
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Y
156
D
082
UniProt
VAR_034997
Y
156
N
VHL_HUMAN
Disease (PCC)
---
C/F/I/L
Y
156
N
083
UniProt
VAR_005746
T
157
I
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
T
157
I
084
UniProt
VAR_005748
L
158
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
158
P
085
UniProt
VAR_005749
L
158
V
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
158
V
086
UniProt
VAR_005750
K
159
E
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
K
159
E
087
UniProt
VAR_005753
R
161
G
VHL_HUMAN
Disease (VHLD)
5030818
C/F/I/L
R
161
G
088
UniProt
VAR_005752
R
161
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
R
161
P
089
UniProt
VAR_005751
R
161
Q
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
R
161
Q
090
UniProt
VAR_005754
C
162
F
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
C
162
F
091
UniProt
VAR_005755
C
162
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
C
162
R
092
UniProt
VAR_005756
C
162
W
VHL_HUMAN
Disease (VHLD)
5030622
C/F/I/L
C
162
W
093
UniProt
VAR_005757
C
162
Y
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
C
162
Y
094
UniProt
VAR_034998
L
163
P
VHL_HUMAN
Disease (RCC)
28940297
C/F/I/L
L
163
P
095
UniProt
VAR_008102
Q
164
H
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Q
164
H
096
UniProt
VAR_005758
Q
164
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Q
164
R
097
UniProt
VAR_008103
V
166
D
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
V
166
D
098
UniProt
VAR_005759
V
166
F
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
V
166
F
099
UniProt
VAR_005760
R
167
G
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
R
167
G
100
UniProt
VAR_005761
R
167
Q
VHL_HUMAN
Disease (VHLD)
5030821
C/F/I/L
R
167
Q
101
UniProt
VAR_005762
R
167
W
VHL_HUMAN
Disease (VHLD)
5030820
C/F/I/L
R
167
W
102
UniProt
VAR_005763
V
170
D
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
V
170
D
103
UniProt
VAR_005764
V
170
F
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
V
170
F
104
UniProt
VAR_005765
V
170
G
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
V
170
G
105
UniProt
VAR_005766
Y
175
D
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
Y
175
D
106
UniProt
VAR_008104
R
176
W
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
R
176
W
107
UniProt
VAR_005768
L
178
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
178
P
108
UniProt
VAR_005769
L
178
Q
VHL_HUMAN
Disease (VHLD)
5030822
C/F/I/L
L
178
Q
109
UniProt
VAR_005770
I
180
V
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
I
180
V
110
UniProt
VAR_005772
L
184
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
184
P
111
UniProt
VAR_005771
L
184
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
184
R
112
UniProt
VAR_005773
E
186
K
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
E
186
K
113
UniProt
VAR_005775
L
188
P
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
188
P
114
UniProt
VAR_005776
L
188
Q
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
188
Q
115
UniProt
VAR_005777
L
188
V
VHL_HUMAN
Disease (VHLD)
5030824
C/F/I/L
L
188
V
116
UniProt
VAR_034999
H
191
D
VHL_HUMAN
Disease (ECYT2)
28940301
C/F/I/L
H
191
D
117
UniProt
VAR_035000
P
192
S
VHL_HUMAN
Disease (ECYT2)
28940300
C/F/I/L
P
192
S
118
UniProt
VAR_035001
L
198
Q
VHL_HUMAN
Disease (PCC)
---
C/F/I/L
L
198
Q
119
UniProt
VAR_005778
L
198
R
VHL_HUMAN
Disease (VHLD)
---
C/F/I/L
L
198
R
120
UniProt
VAR_005779
R
200
W
VHL_HUMAN
Disease (VHLD)
28940298
C/F/I/L
R
200
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-66,D:1-66,G:1-66,J:1-66)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
ELOB_HUMAN
1-66
4
A:1-66
D:1-66
G:1-66
J:1-66
[
close PROSITE info
]
Exons
(5, 20)
Info
All Exons
Exon 1.1a (C:63-114 | F:63-114 | I:62-114 | L...)
Exon 1.4 (C:114-155 | F:114-155 | I:114-155 ...)
Exon 1.6d (C:155-204 | F:155-204 | I:155-206 ...)
Exon 2.7 (B:17-47 | E:17-48 | H:17-47 | K:17...)
Exon 2.10d (B:58-112 | E:58-112 | H:58-112 | K...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.4
3: Boundary 1.4/1.6d
4: Boundary 1.6d/-
5: Boundary 2.6/2.7
6: Boundary 2.7/2.10d
7: Boundary 2.10d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000256474
1a
ENSE00001930974
chr3:
10182692-10183871
1180
VHL_HUMAN
1-114
114
4
C:63-114
F:63-114
I:62-114
L:62-114
52
52
53
53
1.4
ENST00000256474
4
ENSE00001163994
chr3:
10188198-10188320
123
VHL_HUMAN
114-155
42
4
C:114-155
F:114-155
I:114-155
L:114-155
42
42
42
42
1.6d
ENST00000256474
6d
ENSE00001814424
chr3:
10191471-10193904
2434
VHL_HUMAN
155-213
59
4
C:155-204
F:155-204
I:155-206
L:155-204
50
50
52
50
2.1g
ENST00000284811
1g
ENSE00002103151
chr8:
74884341-74884277
65
ELOC_HUMAN
-
0
0
-
-
2.6
ENST00000284811
6
ENSE00001087342
chr8:
74872053-74872000
54
ELOC_HUMAN
1-2
2
0
-
-
2.7
ENST00000284811
7
ENSE00001016720
chr8:
74868289-74868146
144
ELOC_HUMAN
2-50
49
4
B:17-47
E:17-48
H:17-47
K:17-48
31
32
31
32
2.10d
ENST00000284811
10d
ENSE00001424822
chr8:
74859055-74858636
420
ELOC_HUMAN
50-112
63
4
B:58-112
E:58-112
H:58-112
K:58-112
55
55
55
55
[
close EXON info
]
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3zrcc_ (C:)
1b: SCOP_d3zrcf_ (F:)
1c: SCOP_d3zrci_ (I:)
1d: SCOP_d3zrcl_ (L:)
2a: SCOP_d3zrca_ (A:)
2b: SCOP_d3zrcd_ (D:)
2c: SCOP_d3zrcg_ (G:)
2d: SCOP_d3zrcj_ (J:)
3a: SCOP_d3zrcb_ (B:)
3b: SCOP_d3zrce_ (E:)
3c: SCOP_d3zrch_ (H:)
3d: SCOP_d3zrck_ (K:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
VHL
(14)
Family
:
VHL
(14)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3zrcc_
C:
1b
d3zrcf_
F:
1c
d3zrci_
I:
1d
d3zrcl_
L:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Elongin B
(16)
Human (Homo sapiens) [TaxId: 9606]
(15)
2a
d3zrca_
A:
2b
d3zrcd_
D:
2c
d3zrcg_
G:
2d
d3zrcj_
J:
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
Elongin C
(21)
Human (Homo sapiens) [TaxId: 9606]
(18)
3a
d3zrcb_
B:
3b
d3zrce_
E:
3c
d3zrch_
H:
3d
d3zrck_
K:
[
close SCOP info
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (218 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
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Biol.Unit 3 (57 KB)
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