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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3ZR7
Asym. Unit
Info
Asym.Unit (185 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR AGONISM AND ANTAGONISM FOR A SET OF CHEMICALLY RELATED PROGESTERONE RECEPTOR MODULATORS
Authors
:
S. J. Lusher, H. C. A. Raaijmakers, D. Vu-Pham, K. Dechering, T. Wai Lam A. R. Brown, N. M. Hamilton, O. Nimz, R. Azevedo, R. Mcguire, A. Oubrie, J. De Vlieg
Date
:
15 Jun 11 (Deposition) - 17 Aug 11 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Receptor, Agonist, Antagonist
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Lusher, H. C. A. Raaijmakers, D. Vu-Pham, K. Dechering, T. W. Lam, A. R. Brown, N. M. Hamilton, O. Nimz, R. Bosch, R. Mcguire, A. Oubrie, J. De Vlieg
Structural Basis For Agonism And Antagonism For A Set Of Chemically Related Progesterone Receptor Modulators.
J. Biol. Chem. V. 286 35079 2011
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
2a: 2-CHLORO-N-[[4-(3,5-DIMETHYLISOXAZ... (OR8a)
2b: 2-CHLORO-N-[[4-(3,5-DIMETHYLISOXAZ... (OR8b)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
OR8
2
Ligand/Ion
2-CHLORO-N-[[4-(3,5-DIMETHYLISOXAZOL-4-YL)PHENYL]METHYL]-1,4-DIMETHYL-1H-PYRAZOLE-4-SULFONAMIDE
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:715 , LEU A:718 , ASN A:719 , GLN A:725 , TRP A:755 , MET A:756 , MET A:759 , LEU A:763 , PHE A:778 , MET A:801 , CYS A:891 , THR A:894 , PHE A:905 , MET A:909 , HOH A:2038
BINDING SITE FOR RESIDUE OR8 A1000
02
AC2
SOFTWARE
LEU B:715 , LEU B:718 , ASN B:719 , GLN B:725 , TRP B:755 , MET B:756 , MET B:759 , PHE B:778 , MET B:801 , TYR B:890 , CYS B:891 , THR B:894 , PHE B:905 , MET B:909
BINDING SITE FOR RESIDUE OR8 B1000
03
AC3
SOFTWARE
TYR A:890 , ASN A:893 , THR A:894
BINDING SITE FOR RESIDUE GOL A1933
04
AC4
SOFTWARE
PRO A:737 , GLY A:738 , ARG A:740 , ASN A:741 , HOH A:2172
BINDING SITE FOR RESIDUE SO4 A1934
05
AC5
SOFTWARE
TYR B:753 , THR B:829 , HIS B:881 , HIS B:888 , ILE B:920 , HOH B:2064 , HOH B:2142 , HOH B:2173
BINDING SITE FOR RESIDUE GOL B1933
06
AC6
SOFTWARE
LEU A:687 , GLY A:738 , SER A:847 , HOH A:2116 , HOH A:2120 , HOH A:2172
BINDING SITE FOR RESIDUE GOL A1935
07
AC7
SOFTWARE
GLU A:695 , GLN A:725 , ARG A:766 , LYS A:822 , HOH A:2011 , HOH A:2173 , HOH A:2174
BINDING SITE FOR RESIDUE GOL A1936
08
AC8
SOFTWARE
TYR A:753 , THR A:829 , HIS A:881 , HIS A:888 , ILE A:920 , HOH A:2074 , HOH A:2136
BINDING SITE FOR RESIDUE GOL A1937
09
AC9
SOFTWARE
GLN A:752 , GLU A:911 , VAL A:912
BINDING SITE FOR RESIDUE GOL A1938
10
BC1
SOFTWARE
LEU B:687 , GLY B:738 , SER B:847 , HOH B:2050
BINDING SITE FOR RESIDUE GOL B1934
11
BC2
SOFTWARE
TYR B:890 , ASN B:893 , THR B:894 , GLN B:897 , HOH B:2147 , HOH B:2174
BINDING SITE FOR RESIDUE GOL B1935
12
BC3
SOFTWARE
GLU B:695 , PRO B:696 , GLN B:725 , ARG B:766 , LYS B:822 , HOH B:2013 , HOH B:2175 , HOH B:2176
BINDING SITE FOR RESIDUE GOL B1936
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014628 (S865L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014628
S
865
L
PRGR_HUMAN
Polymorphism
2020880
A/B
S
865
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.4b (A:683-738 | B:683-738 (gaps))
Exon 1.5a (A:738-786 | B:738-786)
Exon 1.6a (A:786-830 | B:786-830)
Exon 1.7a (A:830-882 | B:830-882)
Exon 1.8d (A:883-932 | B:883-932)
View:
Select:
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All Exon Boundaries
1: Boundary 1.3/1.4b
2: Boundary 1.4b/1.5a
3: Boundary 1.5a/1.6a
4: Boundary 1.6a/1.7a
5: Boundary 1.7a/1.8d
6: Boundary 1.8d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000325455
1a
ENSE00001204729
chr11:
101001255-100998165
3091
PRGR_HUMAN
1-546
546
0
-
-
1.2
ENST00000325455
2
ENSE00000989714
chr11:
100996889-100996738
152
PRGR_HUMAN
546-597
52
0
-
-
1.3
ENST00000325455
3
ENSE00000745002
chr11:
100962607-100962491
117
PRGR_HUMAN
597-636
40
0
-
-
1.4b
ENST00000325455
4b
ENSE00000795216
chr11:
100933483-100933178
306
PRGR_HUMAN
636-738
103
2
A:683-738
B:683-738 (gaps)
56
56
1.5a
ENST00000325455
5a
ENSE00000989716
chr11:
100922299-100922155
145
PRGR_HUMAN
738-786
49
2
A:738-786
B:738-786
49
49
1.6a
ENST00000325455
6a
ENSE00000989717
chr11:
100920790-100920660
131
PRGR_HUMAN
786-830
45
2
A:786-830
B:786-830
45
45
1.7a
ENST00000325455
7a
ENSE00000795215
chr11:
100912833-100912676
158
PRGR_HUMAN
830-882
53
2
A:830-882
B:830-882
53
53
1.8d
ENST00000325455
8d
ENSE00001350778
chr11:
100910002-100900355
9648
PRGR_HUMAN
883-933
51
2
A:883-932
B:883-932
50
50
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3zr7a_ (A:)
1b: SCOP_d3zr7b_ (B:)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Human (Homo sapiens) [TaxId: 9606]
(122)
1a
d3zr7a_
A:
1b
d3zr7b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Nucleic
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Asymmetric Unit 1
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Asym.Unit (185 KB)
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