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3ZQA
Asym. Unit
Info
Asym.Unit (731 KB)
Biol.Unit 1 (718 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE MUTANT C286A FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH NADPH
Authors
:
A. G. Diaz-Sanchez, L. Gonzalez-Segura, E. Rudino-Pinera, A. Lira-Ro A. Torres-Larios, R. A. Munoz-Clares
Date
:
08 Jun 11 (Deposition) - 26 Oct 11 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Aldehyde Oxidation, Nadph Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Diaz-Sanchez, L. Gonzalez-Segura, E. Rudino-Pinera, A. Lira-Rocha, A. Torres-Larios, R. A. Munoz-Clares
Novel Nadph-Cysteine Covalent Adduct Found In The Active Site Of An Aldehyde Dehydrogenase.
Biochem. J. V. 439 443 2011
[
close entry info
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Hetero Components
(6, 39)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
4a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
4b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
4c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
4d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
5a: TETRAETHYLENE GLYCOL (PG4a)
6a: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ET... (TOEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
23
Ligand/Ion
GLYCEROL
3
K
8
Ligand/Ion
POTASSIUM ION
4
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
6
TOE
1
Ligand/Ion
2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:340 , GLU A:387 , NDP A:1500 , HOH A:2402 , HOH A:2405 , HOH A:2500 , HOH A:2551 , HOH A:2643
BINDING SITE FOR RESIDUE GOL A1491
02
AC2
SOFTWARE
MET A:276 , TRP A:444 , GLY A:445 , PG4 A:1495 , HOH A:2343 , HOH A:2603 , HOH A:2604 , HOH A:2644 , HOH A:2645 , HOH A:2646
BINDING SITE FOR RESIDUE GOL A1492
03
AC3
SOFTWARE
PHE A:4 , GLU A:5 , GLN A:7 , LYS A:187 , GOL A:1494 , HOH A:2013
BINDING SITE FOR RESIDUE GOL A1493
04
AC4
SOFTWARE
GLU A:5 , GLU A:6 , GLN A:7 , LYS A:8 , TYR A:15 , GOL A:1493
BINDING SITE FOR RESIDUE GOL A1494
05
AC5
SOFTWARE
GLN A:157 , SER A:447 , GOL A:1492 , EDO A:1498 , GOL A:1499 , NDP A:1500 , HOH A:2343 , HOH A:2346 , HOH A:2400 , HOH A:2609 , HOH A:2646 , HOH A:2647
BINDING SITE FOR RESIDUE PG4 A1495
06
AC6
SOFTWARE
ARG A:269 , GLN A:422 , ASN A:442 , GLU B:482
BINDING SITE FOR RESIDUE GOL A1496
07
AC7
SOFTWARE
SER A:336 , TYR A:340 , GLU A:386 , HOH A:2499
BINDING SITE FOR RESIDUE GOL A1497
08
AC8
SOFTWARE
ASN A:153 , VAL A:285 , ALA A:286 , THR A:287 , PG4 A:1495 , GOL A:1499 , NDP A:1500 , HOH A:2445
BINDING SITE FOR RESIDUE EDO A1498
09
AC9
SOFTWARE
TRP A:161 , GLU A:252 , VAL A:453 , GLU A:464 , PG4 A:1495 , EDO A:1498 , NDP A:1500 , HOH A:2610
BINDING SITE FOR RESIDUE GOL A1499
10
BC1
SOFTWARE
ILE A:149 , GLY A:150 , ALA A:151 , TRP A:152 , ASN A:153 , LYS A:176 , SER A:178 , GLU A:179 , SER A:208 , GLY A:209 , GLY A:213 , PHE A:227 , THR A:228 , GLY A:229 , GLY A:230 , THR A:233 , VAL A:237 , GLU A:252 , LEU A:253 , GLY A:254 , ALA A:286 , GLU A:387 , PHE A:389 , GOL A:1491 , PG4 A:1495 , EDO A:1498 , GOL A:1499 , HOH A:2341 , HOH A:2355 , HOH A:2356 , HOH A:2377 , HOH A:2385 , HOH A:2405 , HOH A:2410 , HOH A:2496 , HOH A:2500 , HOH A:2648 , HOH A:2649 , HOH A:2650
BINDING SITE FOR RESIDUE NDP A1500
11
BC2
SOFTWARE
THR A:26 , ILE A:27 , ASP A:93 , VAL A:180 , HOH A:2091
BINDING SITE FOR RESIDUE K A1501
12
BC3
SOFTWARE
LYS A:457 , GLY A:460 , HOH A:2344 , LEU B:246
BINDING SITE FOR RESIDUE K A1502
13
BC4
SOFTWARE
HOH A:2636 , MET B:276 , HOH B:2392 , HOH B:2420
BINDING SITE FOR RESIDUE GOL B1491
14
BC5
SOFTWARE
GLN B:157 , GOL B:1495 , HOH B:2252 , HOH B:2254 , HOH B:2326 , HOH B:2328
BINDING SITE FOR RESIDUE GOL B1492
15
BC6
SOFTWARE
PHE B:4 , GLU B:5 , GLN B:7 , LYS B:187 , HOH B:2009 , HOH B:2012 , HOH B:2017
BINDING SITE FOR RESIDUE GOL B1493
16
BC7
SOFTWARE
GLU B:6 , GLN B:7 , LYS B:8 , TYR B:15 , HOH B:2012
BINDING SITE FOR RESIDUE GOL B1494
17
BC8
SOFTWARE
TRP B:161 , GLU B:252 , ILE B:438 , SER B:447 , VAL B:453 , GLU B:464 , GOL B:1492 , NDP B:1498 , HOH B:2254 , HOH B:2309 , HOH B:2328
BINDING SITE FOR RESIDUE GOL B1495
18
BC9
SOFTWARE
GLY B:209 , ARG B:210 , NDP B:1498
BINDING SITE FOR RESIDUE GOL B1496
19
CC1
SOFTWARE
SER B:336 , GLY B:339
BINDING SITE FOR RESIDUE GOL B1497
20
CC2
SOFTWARE
ILE B:149 , GLY B:150 , ALA B:151 , TRP B:152 , ASN B:153 , LYS B:176 , SER B:178 , GLU B:179 , SER B:208 , GLY B:209 , PHE B:227 , THR B:228 , GLY B:229 , GLY B:230 , THR B:233 , VAL B:237 , GLU B:252 , LEU B:253 , GLY B:254 , ALA B:286 , GLU B:387 , PHE B:389 , GOL B:1495 , GOL B:1496 , HOH B:2261 , HOH B:2278 , HOH B:2282 , HOH B:2294 , HOH B:2309 , HOH B:2346 , HOH B:2364
BINDING SITE FOR RESIDUE NDP B1498
21
CC3
SOFTWARE
LEU A:246 , HOH A:2392 , HOH A:2393 , LYS B:457 , GLY B:460
BINDING SITE FOR RESIDUE K B1499
22
CC4
SOFTWARE
THR B:26 , ILE B:27 , ASP B:93 , VAL B:180 , HOH B:2066
BINDING SITE FOR RESIDUE K B1500
23
CC5
SOFTWARE
PHE C:4 , GLU C:5 , GLN C:7 , LYS C:187
BINDING SITE FOR RESIDUE GOL C1491
24
CC6
SOFTWARE
TRP C:161 , GLU C:252 , GLU C:464 , NDP C:1495 , TOE C:1496 , EDO C:1497 , HOH C:2237 , HOH C:2373 , HOH C:2405
BINDING SITE FOR RESIDUE GOL C1492
25
CC7
SOFTWARE
ARG C:314 , LEU C:315 , THR C:323
BINDING SITE FOR RESIDUE GOL C1493
26
CC8
SOFTWARE
SER C:336 , GLY C:339 , TYR C:340
BINDING SITE FOR RESIDUE GOL C1494
27
CC9
SOFTWARE
ILE C:149 , GLY C:150 , ALA C:151 , TRP C:152 , ASN C:153 , LYS C:176 , SER C:178 , GLU C:179 , GLY C:207 , GLY C:209 , PHE C:227 , THR C:228 , GLY C:229 , GLY C:230 , THR C:233 , VAL C:237 , GLU C:252 , LEU C:253 , GLY C:254 , ALA C:286 , GLU C:387 , PHE C:389 , GOL C:1492 , EDO C:1497 , HOH C:2176 , HOH C:2180 , HOH C:2213 , HOH C:2230 , HOH C:2237 , HOH C:2296 , HOH C:2329 , HOH C:2405 , HOH C:2408
BINDING SITE FOR RESIDUE NDP C1495
28
DC1
SOFTWARE
THR C:108 , GLN C:157 , SER C:447 , GOL C:1492 , EDO C:1497 , HOH C:2184 , HOH C:2371 , HOH C:2405 , HOH C:2410
BINDING SITE FOR RESIDUE TOE C1496
29
DC2
SOFTWARE
ASN C:153 , VAL C:285 , ALA C:286 , THR C:287 , GOL C:1492 , NDP C:1495 , TOE C:1496 , HOH C:2263
BINDING SITE FOR RESIDUE EDO C1497
30
DC3
SOFTWARE
THR C:26 , ILE C:27 , ASP C:93 , VAL C:180 , HOH C:2290
BINDING SITE FOR RESIDUE K C1498
31
DC4
SOFTWARE
LYS C:457 , GLY C:460 , LEU D:246
BINDING SITE FOR RESIDUE K C1499
32
DC5
SOFTWARE
GLU D:5 , GLU D:6 , GLN D:7 , LYS D:8 , TYR D:15 , HOH D:2255 , HOH D:2256
BINDING SITE FOR RESIDUE GOL D1491
33
DC6
SOFTWARE
GLN D:157 , GOL D:1493 , HOH D:2243 , HOH D:2245 , HOH D:2306 , HOH D:2406 , HOH D:2408
BINDING SITE FOR RESIDUE GOL D1492
34
DC7
SOFTWARE
TRP D:161 , GLU D:252 , SER D:447 , GLU D:464 , GOL D:1492 , NDP D:1496 , HOH D:2290 , HOH D:2306 , HOH D:2406
BINDING SITE FOR RESIDUE GOL D1493
35
DC8
SOFTWARE
PHE D:4 , GLN D:7 , LYS D:187 , HOH D:2256
BINDING SITE FOR RESIDUE GOL D1494
36
DC9
SOFTWARE
ALA A:2 , HOH A:2001 , LYS D:236 , NDP D:1496
BINDING SITE FOR RESIDUE GOL D1495
37
EC1
SOFTWARE
ILE D:149 , GLY D:150 , ALA D:151 , TRP D:152 , ASN D:153 , LYS D:176 , SER D:178 , GLU D:179 , GLY D:207 , SER D:208 , GLY D:209 , GLY D:213 , PHE D:227 , THR D:228 , GLY D:229 , GLY D:230 , THR D:233 , VAL D:237 , GLU D:252 , LEU D:253 , GLY D:254 , ALA D:286 , GLU D:387 , PHE D:389 , GOL D:1493 , GOL D:1495 , HOH D:2241 , HOH D:2269 , HOH D:2278 , HOH D:2290 , HOH D:2406 , HOH D:2407 , HOH D:2409
BINDING SITE FOR RESIDUE NDP D1496
38
EC2
SOFTWARE
THR D:26 , ILE D:27 , ASP D:93 , VAL D:180 , HOH D:2079
BINDING SITE FOR RESIDUE K D1497
39
EC3
SOFTWARE
LEU C:246 , HOH C:2234 , LYS D:457 , GLY D:460
BINDING SITE FOR RESIDUE K D1498
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:251-258,B:251-258,C:251-258,D:25...)
2: ALDEHYDE_DEHYDR_CYS (A:279-290,B:279-290,C:279-290,D:27...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
BETB_PSEAE
251-258
4
A:251-258
B:251-258
C:251-258
D:251-258
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
BETB_PSEAE
279-290
4
A:279-290
B:279-290
C:279-290
D:279-290
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3zqaa_ (A:)
1b: SCOP_d3zqab_ (B:)
1c: SCOP_d3zqac_ (C:)
1d: SCOP_d3zqad_ (D:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Pseudomonas aeruginosa [TaxId: 287]
(5)
1a
d3zqaa_
A:
1b
d3zqab_
B:
1c
d3zqac_
C:
1d
d3zqad_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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all PFAM domains
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