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Biol. Unit 1
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Asym.Unit (150 KB)
Biol.Unit 1 (284 KB)
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(1)
Title
:
MOUSE IGG2A IN COMPLEX WITH MOUSE TRIM21 PRYSPRY
Authors
:
L. C. James
Date
:
19 Feb 13 (Deposition) - 22 May 13 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Immune System-Ligase Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. H. Keeble, Z. Khan, A. Forster, L. C. James
Trim21 Is An Igg Receptor That Is Structurally, Thermodynamically, And Kinetically Conserved.
Proc. Natl. Acad. Sci. Usa V. 105 6045 2008
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-D-GALACTOSE (GALa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
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No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:241 , NAG A:1445 , BMA A:1446 , FUC A:1451 , HOH A:2086 , HOH A:2091
BINDING SITE FOR RESIDUE MAN A1449
2
AC2
SOFTWARE
TYR A:296 , NAG A:1444 , NAG A:1445 , MAN A:1449 , HOH A:2092 , HOH A:2093 , HOH A:2094
BINDING SITE FOR RESIDUE FUC A1451
3
AC3
SOFTWARE
PHE A:243 , PRO A:244 , PRO A:245 , LYS A:246 , ILE A:258 , THR A:260 , VAL A:264 , ASP A:265 , ASP A:295 , TYR A:296 , ASN A:297 , ARG A:301 , MAN A:1449 , FUC A:1451 , HOH A:2005 , HOH A:2009 , HOH A:2027 , HOH A:2086 , HOH A:2087 , HOH A:2088 , HOH A:2089 , HOH A:2090
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1444 THROUGH GAL A1450 BOUND TO ASN A 297
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:423-429)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
GCAA_MOUSE
306-312
2
A:423-429
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3zo0b_ (B:)
2a: SCOP_d3zo0a1 (A:237-339)
2b: SCOP_d3zo0a2 (A:340-444)
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)
Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
SPRY domain
(9)
Protein domain
:
automated matches
(3)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d3zo0b_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
2a
d3zo0a1
A:237-339
2b
d3zo0a2
A:340-444
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CATH Domains
(0, 0 ; only for superseded entry 2VOL: 1,2)
Info
all CATH domains
1a: CATH_2volA02 ()
1b: CATH_2volA01 ()
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Pfam Domains
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all PFAM domains
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