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3ZNF
Asym. Unit
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Asym.Unit (13 KB)
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(1)
Title
:
HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF A SINGLE ZINC FINGER FROM A HUMAN ENHANCER BINDING PROTEIN IN SOLUTION
Authors
:
A. M. Gronenborn, G. M. Clore, J. G. Omichinski
Date
:
09 Jul 90 (Deposition) - 15 Jan 92 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Zinc Finger Dna Binding Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. G. Omichinski, G. M. Clore, E. Appella, K. Sakaguchi, A. M. Gronenborn
High-Resolution Three-Dimensional Structure Of A Single Zinc Finger From A Human Enhancer Binding Protein In Solution.
Biochemistry V. 29 9324 1990
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:5 , CYS A:8 , HIS A:21 , HIS A:27
BINDING SITE FOR RESIDUE ZN A 31
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (-|-|-|A:5-27)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
ZEP1_HUMAN
408-428
436-458
2090-2110
2118-2140
1
-
-
-
A:5-27
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Exons
(2, 2)
Info
All Exons
Exon 1.11 (A:1-16)
Exon 1.12 (A:16-30)
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All Exon Boundaries
1: Boundary 1.10/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.13b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000379388
3a
ENSE00001418578
chr6:
12012571-12012799
229
ZEP1_HUMAN
-
0
0
-
-
1.5a
ENST00000379388
5a
ENSE00002199131
chr6:
12015759-12015901
143
ZEP1_HUMAN
1-14
14
0
-
-
1.8
ENST00000379388
8
ENSE00001961408
chr6:
12089417-12089470
54
ZEP1_HUMAN
14-32
19
0
-
-
1.9e
ENST00000379388
9e
ENSE00001480851
chr6:
12120123-12126103
5981
ZEP1_HUMAN
32-2025
1994
0
-
-
1.10
ENST00000379388
10
ENSE00001480764
chr6:
12129992-12130125
134
ZEP1_HUMAN
2026-2070
45
0
-
-
1.11
ENST00000379388
11
ENSE00001984503
chr6:
12131000-12131175
176
ZEP1_HUMAN
2070-2129
60
1
A:1-16
16
1.12
ENST00000379388
12
ENSE00000685179
chr6:
12136024-12136125
102
ZEP1_HUMAN
2129-2163
35
1
A:16-30
15
1.13b
ENST00000379388
13b
ENSE00002181236
chr6:
12161672-12162162
491
ZEP1_HUMAN
2163-2326
164
0
-
-
1.14b
ENST00000379388
14b
ENSE00001480796
chr6:
12163516-12165232
1717
ZEP1_HUMAN
2327-2718
392
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3znfa_ (A:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
Enhancer binding protein
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3znfa_
A:
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_zf_H2C2_2_3znfA01 (A:1-14)
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Organisms
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)
(
)
Clan
:
C2H2-zf
(71)
Family
:
zf-H2C2_2
(52)
Homo sapiens (Human)
(37)
1a
zf-H2C2_2-3znfA01
A:1-14
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Chain A
Asymmetric Unit 1
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