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3ZKJ
Asym. Unit
Info
Asym.Unit (286 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANKYRIN REPEAT AND SOCS BOX-CONTAINING PROTEIN 9 (ASB9) IN COMPLEX WITH ELONGINB AND ELONGINC
Authors
:
J. R. C. Muniz, K. Guo, Y. Zhang, V. Ayinampudi, P. Savitsky, T. Keates, P. Filippakopoulos, M. Vollmar, W. W. Yue, T. Krojer, E. Ugochukwu, F. Von Delft, S. Knapp, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. A. N. Bullock
Date
:
23 Jan 13 (Deposition) - 30 Jan 13 (Release) - 28 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.58
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Transcription, Transcription Regulation, Autoantibody
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. C. Muniz, K. Guo, N. J. Kershaw, V. Ayinampudi, F. Von Delft, J. J. Babon, A. N. Bullock
Molecular Architecture Of The Ankyrin Socs Box Family Of Cul5-Dependent E3 Ubiquitin Ligases
J. Mol. Biol. V. 425 3166 2013
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:133 , LEU A:134 , ALA A:135 , SER A:136 , GLU A:140 , ARG A:143 , LEU A:167
BINDING SITE FOR RESIDUE EDO A1295
2
AC2
SOFTWARE
GLU A:75 , ASN A:108
BINDING SITE FOR RESIDUE PEG A1296
3
AC3
SOFTWARE
ALA D:155
BINDING SITE FOR RESIDUE EDO D1295
4
AC4
SOFTWARE
LYS F:28 , LEU F:44 , LEU F:50 , LEU F:51 , ASP F:53 , HOH F:2002
BINDING SITE FOR RESIDUE CL F1107
5
AC5
SOFTWARE
SER A:211 , GLU A:212 , GLU A:213 , GLY D:47 , HIS D:48 , GLN D:49
BINDING SITE FOR RESIDUE CL A1297
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: ANK_REPEAT (A:68-100,D:68-100|A:101-133,D:101-...)
2: SOCS (A:244-294,D:244-294)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REPEAT
PS50088
Ankyrin repeat profile.
ASB9_HUMAN
68-100
101-133
133-165
166-198
198-230
10
A:68-100
D:68-100
A:101-133
D:101-133
A:133-165
D:133-165
A:166-198
D:166-198
A:198-230
D:198-230
2
SOCS
PS50225
SOCS box domain profile.
ASB9_HUMAN
244-294
2
A:244-294
D:244-294
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Exons
(2, 4)
Info
All Exons
Exon 1.7 (B:18-46 | E:18-46)
Exon 1.10d (B:58-112 (gaps) | E:59-112 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.10d
3: Boundary 1.10d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1g
ENST00000284811
1g
ENSE00002103151
chr8:
74884341-74884277
65
ELOC_HUMAN
-
0
0
-
-
1.6
ENST00000284811
6
ENSE00001087342
chr8:
74872053-74872000
54
ELOC_HUMAN
1-2
2
0
-
-
1.7
ENST00000284811
7
ENSE00001016720
chr8:
74868289-74868146
144
ELOC_HUMAN
2-50
49
2
B:18-46
E:18-46
29
29
1.10d
ENST00000284811
10d
ENSE00001424822
chr8:
74859055-74858636
420
ELOC_HUMAN
50-112
63
2
B:58-112 (gaps)
E:59-112 (gaps)
55
54
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3zkjc_ (C:)
1b: SCOP_d3zkjf_ (F:)
2a: SCOP_d3zkjb_ (B:)
2b: SCOP_d3zkje_ (E:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
automated matches
(80)
Human (Homo sapiens) [TaxId: 9606]
(62)
1a
d3zkjc_
C:
1b
d3zkjf_
F:
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
Elongin C
(21)
Human (Homo sapiens) [TaxId: 9606]
(18)
2a
d3zkjb_
B:
2b
d3zkje_
E:
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CATH Domains
(0, 0 ; only for superseded entry 2XAI: 1,2)
Info
all CATH domains
1a: CATH_2xaiB00 ()
1b: CATH_2xaiE00 ()
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (286 KB)
Header - Asym.Unit
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