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3ZK1
Asym. Unit
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Asym.Unit (623 KB)
Biol.Unit 1 (308 KB)
Biol.Unit 2 (306 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SODIUM BINDING ROTOR RING AT PH 5.3
Authors
:
S. Schulz, T. Meier, O. Yildiz
Date
:
21 Jan 13 (Deposition) - 29 May 13 (Release) - 18 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K (1x)
Biol. Unit 2: L,M,N,O,P,Q,R,S,T,U,V (1x)
Keywords
:
Membrane Protein, Atp Synthase, Rotor Ring
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Schulz, M. Iglesias-Cans, A. Krah, O. Yildiz, V. Leone, D. Matthies G. M. Cook, J. D. Faraldo-Gomez, T. Meier
A New Type Of Na(+)-Driven Atp Synthase Membrane Rotor With A Two-Carboxylate Ion-Coupling Motif.
Plos Biol. V. 11 01596 2013
[
close entry info
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Hetero Components
(4, 49)
Info
All Hetero Components
1a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
1b: DECYL-BETA-D-MALTOPYRANOSIDE (DMUb)
1c: DECYL-BETA-D-MALTOPYRANOSIDE (DMUc)
1d: DECYL-BETA-D-MALTOPYRANOSIDE (DMUd)
1e: DECYL-BETA-D-MALTOPYRANOSIDE (DMUe)
1f: DECYL-BETA-D-MALTOPYRANOSIDE (DMUf)
1g: DECYL-BETA-D-MALTOPYRANOSIDE (DMUg)
1h: DECYL-BETA-D-MALTOPYRANOSIDE (DMUh)
1i: DECYL-BETA-D-MALTOPYRANOSIDE (DMUi)
1j: DECYL-BETA-D-MALTOPYRANOSIDE (DMUj)
1k: DECYL-BETA-D-MALTOPYRANOSIDE (DMUk)
1l: DECYL-BETA-D-MALTOPYRANOSIDE (DMUl)
1m: DECYL-BETA-D-MALTOPYRANOSIDE (DMUm)
1n: DECYL-BETA-D-MALTOPYRANOSIDE (DMUn)
1o: DECYL-BETA-D-MALTOPYRANOSIDE (DMUo)
1p: DECYL-BETA-D-MALTOPYRANOSIDE (DMUp)
1q: DECYL-BETA-D-MALTOPYRANOSIDE (DMUq)
1r: DECYL-BETA-D-MALTOPYRANOSIDE (DMUr)
1s: DECYL-BETA-D-MALTOPYRANOSIDE (DMUs)
1t: DECYL-BETA-D-MALTOPYRANOSIDE (DMUt)
1u: DECYL-BETA-D-MALTOPYRANOSIDE (DMUu)
1v: DECYL-BETA-D-MALTOPYRANOSIDE (DMUv)
2a: DODECYL-BETA-D-MALTOSIDE (LMTa)
2b: DODECYL-BETA-D-MALTOSIDE (LMTb)
2c: DODECYL-BETA-D-MALTOSIDE (LMTc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
3i: SODIUM ION (NAi)
3j: SODIUM ION (NAj)
3k: SODIUM ION (NAk)
3l: SODIUM ION (NAl)
3m: SODIUM ION (NAm)
3n: SODIUM ION (NAn)
3o: SODIUM ION (NAo)
3p: SODIUM ION (NAp)
3q: SODIUM ION (NAq)
3r: SODIUM ION (NAr)
3s: SODIUM ION (NAs)
3t: SODIUM ION (NAt)
3u: SODIUM ION (NAu)
3v: SODIUM ION (NAv)
4a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
4b: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DMU
22
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
2
LMT
3
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
3
NA
22
Ligand/Ion
SODIUM ION
4
TAM
2
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
[
close Hetero Component info
]
Sites
(49, 49)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:32 , GLU A:65 , HOH A:2007 , VAL K:63 , SER K:66
BINDING SITE FOR RESIDUE NA A 90
02
AC2
SOFTWARE
CYS A:13 , VAL A:16 , HOH A:2002 , DMU B:92 , MET K:1 , ILE K:9 , DMU K:92
BINDING SITE FOR RESIDUE DMU A 92
03
AC3
SOFTWARE
VAL A:63 , SER A:66 , HOH A:2013 , GLU B:32 , GLU B:65
BINDING SITE FOR RESIDUE NA B 90
04
AC4
SOFTWARE
MET A:1 , ILE A:9 , DMU A:92 , DMU C:92
BINDING SITE FOR RESIDUE DMU B 92
05
AC5
SOFTWARE
VAL B:63 , SER B:66 , HOH B:2011 , GLU C:32 , GLU C:65
BINDING SITE FOR RESIDUE NA C 90
06
AC6
SOFTWARE
MET B:1 , DMU B:92 , HOH C:2001 , DMU D:92
BINDING SITE FOR RESIDUE DMU C 92
07
AC7
SOFTWARE
VAL C:63 , SER C:66 , HOH C:2008 , GLU D:32 , GLU D:65
BINDING SITE FOR RESIDUE NA D 90
08
AC8
SOFTWARE
MET C:1 , DMU C:92 , ASP D:2 , THR D:5 , CYS D:13 , DMU E:92
BINDING SITE FOR RESIDUE DMU D 92
09
AC9
SOFTWARE
VAL D:63 , SER D:66 , HOH D:2009 , GLU E:32 , GLU E:65
BINDING SITE FOR RESIDUE NA E 90
10
BC1
SOFTWARE
MET D:1 , CYS D:13 , DMU D:92 , ASP E:2 , THR E:5 , ILE E:9 , DMU F:92
BINDING SITE FOR RESIDUE DMU E 92
11
BC2
SOFTWARE
VAL E:63 , SER E:66 , HOH E:2007 , GLU F:32 , GLU F:65
BINDING SITE FOR RESIDUE NA F 90
12
BC3
SOFTWARE
MET E:1 , ILE E:9 , DMU E:92 , THR F:5 , DMU G:92
BINDING SITE FOR RESIDUE DMU F 92
13
BC4
SOFTWARE
VAL F:63 , SER F:66 , HOH F:2012 , GLU G:32 , GLU G:65
BINDING SITE FOR RESIDUE NA G 90
14
BC5
SOFTWARE
MET F:1 , ILE F:9 , CYS F:13 , DMU F:92 , MET G:1 , ASP G:2 , THR G:5 , DMU H:92
BINDING SITE FOR RESIDUE DMU G 92
15
BC6
SOFTWARE
VAL G:63 , SER G:66 , HOH G:2008 , GLU H:32 , GLU H:65
BINDING SITE FOR RESIDUE NA H 90
16
BC7
SOFTWARE
MET G:1 , ILE G:9 , DMU G:92 , MET H:1 , ASP H:2 , THR H:5 , CYS H:13 , DMU I:92
BINDING SITE FOR RESIDUE DMU H 92
17
BC8
SOFTWARE
VAL H:63 , SER H:66 , HOH H:2005 , GLU I:32 , GLU I:65
BINDING SITE FOR RESIDUE NA I 90
18
BC9
SOFTWARE
ILE H:9 , CYS H:13 , DMU H:92 , ASP I:2 , THR I:5 , DMU J:92
BINDING SITE FOR RESIDUE DMU I 92
19
CC1
SOFTWARE
VAL I:63 , SER I:66 , HOH I:2008 , GLU J:32 , GLU J:65
BINDING SITE FOR RESIDUE NA J 90
20
CC2
SOFTWARE
DMU I:92 , MET J:1 , THR J:5 , DMU K:92
BINDING SITE FOR RESIDUE DMU J 92
21
CC3
SOFTWARE
VAL J:63 , SER J:66 , HOH J:2008 , GLU K:32 , GLU K:65
BINDING SITE FOR RESIDUE NA K 90
22
CC4
SOFTWARE
DMU A:92 , MET J:1 , DMU J:92 , THR K:5 , ILE K:9 , HOH K:2001
BINDING SITE FOR RESIDUE DMU K 92
23
CC5
SOFTWARE
GLU L:32 , GLU L:65 , HOH L:2004 , VAL V:63 , SER V:66
BINDING SITE FOR RESIDUE NA L 90
24
CC6
SOFTWARE
ILE L:9 , DMU M:92 , CYS V:13 , DMU V:92
BINDING SITE FOR RESIDUE DMU L 92
25
CC7
SOFTWARE
VAL L:63 , SER L:66 , HOH L:2007 , GLU M:32 , GLU M:65
BINDING SITE FOR RESIDUE NA M 90
26
CC8
SOFTWARE
MET L:1 , THR L:5 , CYS L:13 , DMU L:92 , CYS M:13 , DMU N:92
BINDING SITE FOR RESIDUE DMU M 92
27
CC9
SOFTWARE
LYS M:87 , HOH M:2013 , TYR N:80
BINDING SITE FOR RESIDUE TAM M1090
28
DC1
SOFTWARE
VAL M:63 , SER M:66 , HOH M:2003 , GLU N:32 , GLU N:65
BINDING SITE FOR RESIDUE NA N 90
29
DC2
SOFTWARE
MET M:1 , CYS M:13 , DMU M:92 , MET N:1 , ASP N:2 , THR N:5 , ILE N:9 , DMU O:92
BINDING SITE FOR RESIDUE DMU N 92
30
DC3
SOFTWARE
VAL N:63 , SER N:66 , HOH N:2006 , GLU O:32 , GLU O:65
BINDING SITE FOR RESIDUE NA O 90
31
DC4
SOFTWARE
MET N:1 , CYS N:13 , DMU N:92 , ASP O:2 , THR O:5 , ILE O:9 , CYS O:13 , DMU P:92
BINDING SITE FOR RESIDUE DMU O 92
32
DC5
SOFTWARE
VAL O:63 , SER O:66 , HOH O:2011 , GLU P:32 , GLU P:65
BINDING SITE FOR RESIDUE NA P 90
33
DC6
SOFTWARE
MET O:1 , ILE O:9 , DMU O:92 , THR P:5 , CYS P:13 , DMU Q:92
BINDING SITE FOR RESIDUE DMU P 92
34
DC7
SOFTWARE
VAL P:63 , SER P:66 , HOH P:2010 , GLU Q:32 , GLU Q:65
BINDING SITE FOR RESIDUE NA Q 90
35
DC8
SOFTWARE
MET P:1 , ILE P:9 , DMU P:92 , DMU R:92
BINDING SITE FOR RESIDUE DMU Q 92
36
DC9
SOFTWARE
VAL Q:63 , SER Q:66 , HOH Q:2007 , GLU R:32 , GLU R:65
BINDING SITE FOR RESIDUE NA R 90
37
EC1
SOFTWARE
ILE Q:9 , DMU Q:92 , THR R:5 , ILE R:9 , HOH R:2002 , DMU S:92
BINDING SITE FOR RESIDUE DMU R 92
38
EC2
SOFTWARE
LEU Q:59 , ARG R:50
BINDING SITE FOR RESIDUE TAM R1090
39
EC3
SOFTWARE
VAL R:63 , SER R:66 , HOH R:2008 , GLU S:32 , GLU S:65
BINDING SITE FOR RESIDUE NA S 90
40
EC4
SOFTWARE
MET R:1 , ILE R:9 , DMU R:92 , HOH R:2002 , MET S:1 , THR S:5 , ILE S:9 , DMU T:92
BINDING SITE FOR RESIDUE DMU S 92
41
EC5
SOFTWARE
VAL S:63 , SER S:66 , HOH S:2002 , GLU T:32 , GLU T:65
BINDING SITE FOR RESIDUE NA T 90
42
EC6
SOFTWARE
MET S:1 , CYS S:13 , DMU S:92 , THR T:5 , CYS T:13 , HOH T:2002 , DMU U:92
BINDING SITE FOR RESIDUE DMU T 92
43
EC7
SOFTWARE
VAL T:63 , SER T:66 , HOH T:2004 , GLU U:32 , GLU U:65
BINDING SITE FOR RESIDUE NA U 90
44
EC8
SOFTWARE
MET T:1 , ILE T:9 , DMU T:92 , MET U:1 , ASP U:2 , THR U:5 , VAL U:16 , DMU V:92
BINDING SITE FOR RESIDUE DMU U 92
45
EC9
SOFTWARE
VAL U:63 , SER U:66 , HOH U:2002 , GLU V:32 , GLU V:65
BINDING SITE FOR RESIDUE NA V 90
46
FC1
SOFTWARE
DMU L:92 , CYS U:13 , DMU U:92
BINDING SITE FOR RESIDUE DMU V 92
47
FC2
SOFTWARE
TYR A:70
BINDING SITE FOR RESIDUE LMT B1090
48
FC3
SOFTWARE
TYR C:80 , LMT C:1091
BINDING SITE FOR RESIDUE LMT C1090
49
FC4
SOFTWARE
ILE C:69 , VAL C:73 , ALA C:81 , LMT C:1090
BINDING SITE FOR RESIDUE LMT C1091
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 22)
Info
All PROSITE Patterns/Profiles
1: ATPASE_C (A:44-65,B:44-65,C:44-65,D:44-65,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_C
PS00605
ATP synthase c subunit signature.
ATPL_FUSNN
44-65
22
A:44-65
B:44-65
C:44-65
D:44-65
E:44-65
F:44-65
G:44-65
H:44-65
I:44-65
J:44-65
K:44-65
L:44-65
M:44-65
N:44-65
O:44-65
P:44-65
Q:44-65
R:44-65
S:44-65
T:44-65
U:44-65
V:44-65
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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Chain H
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