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3ZJY
Asym. Unit
Info
Asym.Unit (921 KB)
Biol.Unit 1 (330 KB)
Biol.Unit 2 (275 KB)
Biol.Unit 3 (309 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IMPORTIN 13 - RANGTP - EIF1A COMPLEX
Authors
:
M. Gruenwald, D. Lazzaretti, F. Bono
Date
:
21 Jan 13 (Deposition) - 10 Apr 13 (Release) - 10 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: F,G (1x)
Keywords
:
Translation, Active Transport, Cell Nucleus, Nucleocytoplasmic Transport, Multiprotein Complex, Rna-Binding Protein, Ran Gtp-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Grunwald, D. Lazzaretti, F. Bono
Structural Basis For The Nuclear Export Activity Of Importin13.
Embo J. V. 32 899 2013
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
1c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTP
3
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
MG
3
Ligand/Ion
MAGNESIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:24 , THR A:42 , ASP A:65 , GTP A:250
BINDING SITE FOR RESIDUE MG A1178
2
AC2
SOFTWARE
GLY A:19 , GLY A:20 , GLY A:22 , LYS A:23 , THR A:24 , THR A:25 , LYS A:37 , TYR A:39 , ALA A:41 , THR A:42 , THR A:66 , GLY A:68 , ASN A:122 , ASP A:125 , SER A:150 , ALA A:151 , LYS A:152 , MG A:1178
BINDING SITE FOR RESIDUE GTP A 250
3
AC3
SOFTWARE
THR D:24 , THR D:42 , ASP D:65 , GTP D:250
BINDING SITE FOR RESIDUE MG D1178
4
AC4
SOFTWARE
GLY D:19 , GLY D:20 , GLY D:22 , LYS D:23 , THR D:24 , THR D:25 , GLU D:36 , LYS D:37 , TYR D:39 , VAL D:40 , THR D:42 , THR D:66 , GLY D:68 , LYS D:123 , SER D:150 , ALA D:151 , LYS D:152 , MG D:1178
BINDING SITE FOR RESIDUE GTP D 250
5
AC5
SOFTWARE
THR F:24 , THR F:42 , ASP F:65 , GTP F:250
BINDING SITE FOR RESIDUE MG F1178
6
AC6
SOFTWARE
GLY F:19 , GLY F:20 , GLY F:22 , LYS F:23 , THR F:24 , THR F:25 , GLU F:36 , LYS F:37 , TYR F:39 , VAL F:40 , THR F:42 , GLY F:68 , ASN F:122 , LYS F:123 , ASP F:125 , SER F:150 , ALA F:151 , MG F:1178
BINDING SITE FOR RESIDUE GTP F 250
[
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051900 (R95I, chain A/D/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051900
R
95
I
RAN_HUMAN
Polymorphism
11546488
A/D/F
R
95
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: IF1A (C:41-63)
2: IMPORTIN_B_NT (B:45-111,E:45-111,G:45-111)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IF1A
PS01262
Eukaryotic initiation factor 1A signature.
IF1AX_HUMAN
41-63
1
C:41-63
2
IMPORTIN_B_NT
PS50166
Importin-beta N-terminal domain profile.
IPO13_HUMAN
45-111
3
B:45-111
E:45-111
G:45-111
[
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Exons
(9, 19)
Info
All Exons
Exon 1.2 (C:28-34)
Exon 1.3 (C:34-68 (gaps))
Exon 1.4 (C:69-85)
Exon 1.5 (C:86-108 (gaps))
Exon 2.2a (A:9-32 | D:8-32 | F:8-32)
Exon 2.2d (A:33-61 | D:33-61 | F:33-61)
Exon 2.3 (A:61-103 | D:61-103 | F:61-103)
Exon 2.5b (A:103-165 | D:103-165 | F:103-165)
Exon 2.6c (A:166-177 | D:166-177 | F:166-177)
View:
Select:
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All Exon Boundaries
01: Boundary 1.1a/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary -/2.2a
07: Boundary 2.2a/2.2d
08: Boundary 2.2d/2.3
09: Boundary 2.3/2.5b
10: Boundary 2.5b/2.6c
11: Boundary 2.6c/2.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000379607
1a
ENSE00001481854
X:20159962-20159743
220
IF1AX_HUMAN
1-6
6
0
-
-
1.2
ENST00000379607
2
ENSE00001689602
X:20156740-20156657
84
IF1AX_HUMAN
6-34
29
1
C:28-34
7
1.3
ENST00000379607
3
ENSE00001742922
X:20153959-20153856
104
IF1AX_HUMAN
34-68
35
1
C:34-68 (gaps)
35
1.4
ENST00000379607
4
ENSE00001801842
X:20152125-20152075
51
IF1AX_HUMAN
69-85
17
1
C:69-85
17
1.5
ENST00000379607
5
ENSE00001733715
X:20150381-20150300
82
IF1AX_HUMAN
86-113
28
1
C:86-108 (gaps)
23
1.6
ENST00000379607
6
ENSE00001199818
X:20148725-20148634
92
IF1AX_HUMAN
113-143
31
0
-
-
1.7b
ENST00000379607
7b
ENSE00001326974
X:20146429-20142636
3794
IF1AX_HUMAN
144-144
1
0
-
-
2.2a
ENST00000392369
2a
ENSE00001511608
chr12:
131356783-131357174
392
RAN_HUMAN
1-32
32
3
A:9-32
D:8-32
F:8-32
24
25
25
2.2d
ENST00000392369
2d
ENSE00000903701
chr12:
131357381-131357465
85
RAN_HUMAN
33-61
29
3
A:33-61
D:33-61
F:33-61
29
29
29
2.3
ENST00000392369
3
ENSE00000903703
chr12:
131357548-131357673
126
RAN_HUMAN
61-103
43
3
A:61-103
D:61-103
F:61-103
43
43
43
2.5b
ENST00000392369
5b
ENSE00000903705
chr12:
131359091-131359278
188
RAN_HUMAN
103-165
63
3
A:103-165
D:103-165
F:103-165
63
63
63
2.6c
ENST00000392369
6c
ENSE00000903707
chr12:
131360157-131360327
171
RAN_HUMAN
166-222
57
3
A:166-177
D:166-177
F:166-177
12
12
12
2.7c
ENST00000392369
7c
ENSE00001511600
chr12:
131360427-131360826
400
RAN_HUMAN
223-236
14
0
-
-
[
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SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Chain G
Asymmetric Unit 1
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Asym.Unit (921 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (275 KB)
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Biol.Unit 3 (309 KB)
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