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3ZJN
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
M.ACETIVORANS PROTOGLOBIN IN COMPLEX WITH CYANIDE
Authors
:
A. Pesce, L. Tilleman, J. Donne, E. Aste, P. Ascenzi, C. Ciaccio, M. Cole L. Moens, C. Viappiani, S. Dewilde, M. Bolognesi, M. Nardini
Date
:
18 Jan 13 (Deposition) - 26 Jun 13 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Iron-Binding Protein, Cyanide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Pesce, L. Tilleman, J. Donne, E. Aste, P. Ascenzi, C. Ciaccio, M. Coletta, L. Moens, C. Viappiani, S. Dewilde, M. Bolognesi, M. Nardini
Structure And Haem-Distal Site Plasticity In Methanosarcina Acetivorans Protoglobin.
Plos One V. 8 66144 2013
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: CYANIDE ION (CYNa)
1b: CYANIDE ION (CYNb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYN
2
Ligand/Ion
CYANIDE ION
2
GOL
5
Ligand/Ion
GLYCEROL
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:70 , TYR A:73 , PHE A:74 , TYR A:85 , VAL A:89 , ARG A:92 , PHE A:93 , TRP A:96 , TYR A:112 , ARG A:119 , HIS A:120 , LYS A:125 , ASN A:126 , ILE A:137 , TYR A:141 , PHE A:145 , ILE A:146 , ILE A:149 , VAL A:182 , TRP A:185 , CYN A:201 , HOH A:2151 , HOH A:2152 , HOH A:2181 , HOH A:2183 , HOH A:2242
BINDING SITE FOR RESIDUE HEM A 200
02
AC2
SOFTWARE
TRP A:60 , TYR A:61 , PHE A:93 , HEM A:200
BINDING SITE FOR RESIDUE CYN A 201
03
AC3
SOFTWARE
LEU B:70 , TYR B:73 , PHE B:74 , TYR B:85 , VAL B:89 , ARG B:92 , PHE B:93 , TRP B:96 , TYR B:112 , ARG B:119 , HIS B:120 , LYS B:125 , ASN B:126 , ILE B:137 , TYR B:141 , LEU B:142 , PHE B:145 , ILE B:146 , ILE B:149 , VAL B:182 , TRP B:185 , CYN B:201 , HOH B:2122 , HOH B:2123 , HOH B:2154 , HOH B:2159 , HOH B:2208
BINDING SITE FOR RESIDUE HEM B 200
04
AC4
SOFTWARE
TRP B:60 , TYR B:61 , PHE B:93 , HEM B:200
BINDING SITE FOR RESIDUE CYN B 201
05
AC5
SOFTWARE
ASP B:58 , TYR B:61 , GLY B:62 , ARG B:90 , HOH B:2209
BINDING SITE FOR RESIDUE GOL B1196
06
AC6
SOFTWARE
GLU A:132 , SER A:133 , HOH A:2190
BINDING SITE FOR RESIDUE GOL A1196
07
AC7
SOFTWARE
ARG A:140 , PRO B:19 , ASP B:24 , TYR B:187 , HOH B:2031
BINDING SITE FOR RESIDUE GOL B1197
08
AC8
SOFTWARE
LEU A:22 , LEU A:25 , LYS A:26 , LYS A:29 , TYR A:105 , HOH A:2038
BINDING SITE FOR RESIDUE GOL A1197
09
AC9
SOFTWARE
GLU A:37 , TYR A:41 , LYS A:169 , HOH A:2065 , HOH A:2243 , HOH A:2245
BINDING SITE FOR RESIDUE GOL A1198
10
BC1
SOFTWARE
ARG A:122 , PRO A:135 , ASN A:136 , HOH A:2118 , HOH A:2191 , HOH A:2192 , HOH A:2246 , HOH A:2247
BINDING SITE FOR RESIDUE PO4 A1199
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (160 KB)
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