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Getting 'Biological Unit' information from database.
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3ZJG
Asym. Unit
Info
Asym.Unit (234 KB)
Biol.Unit 1 (227 KB)
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(1)
Title
:
A20 OTU DOMAIN WITH IRREVERSIBLY OXIDISED CYS103 FROM 60 MIN H2O2 SOAK.
Authors
:
Y. Kulathu, F. J. Garcia, T. E. T. Mevissen, M. Busch, N. Arnaudo, K. S. Ca D. Barford, D. Komander
Date
:
17 Jan 13 (Deposition) - 06 Mar 13 (Release) - 05 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Ubiquitin, Deubiquitinating Enzyme, Reversible Oxidation, Sulphenic Acid, Sulphinic Acid, Sulphonic Acid, Cys Protease
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Kulathu, F. J. Garcia, T. E. T. Mevissen, M. Busch, N. Arnaudo, K. S. Carroll, D. Barford, D. Komander
Regulation Of A20 And Other Otu Deubiquitinases By Reversible Oxidation
Nat. Commun. V. 4 1569 2013
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 3-SULFINOALANINE (CSDa)
3a: CYSTEINESULFONIC ACID (OCSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
3
OCS
1
Mod. Amino Acid
CYSTEINESULFONIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:311 , GLY B:281 , TRP B:317
BINDING SITE FOR RESIDUE CL B1358
2
AC2
SOFTWARE
CYS B:86 , ARG B:87 , ARG B:278 , HOH B:2051
BINDING SITE FOR RESIDUE CL B1359
3
AC3
SOFTWARE
TRP B:317 , ASP B:318 , HIS B:323
BINDING SITE FOR RESIDUE CL B1360
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020447 (A125V, chain A/B, )
2: VAR_022143 (F127C, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020447
A
125
V
TNAP3_HUMAN
Polymorphism
5029941
A/B
A
125
V
2
UniProt
VAR_022143
F
127
C
TNAP3_HUMAN
Polymorphism
2230926
A/B
F
127
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: OTU (A:92-263,B:92-263)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OTU
PS50802
OTU domain profile.
TNAP3_HUMAN
92-263
2
A:92-263
B:92-263
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Exons
(6, 12)
Info
All Exons
Exon 1.3b (A:6-99 | B:5-99)
Exon 1.4 (A:99-162 (gaps) | B:99-154)
Exon 1.5 (A:163-212 (gaps) | B:164-212 (gaps...)
Exon 1.6b (A:212-269 (gaps) | B:212-269 (gaps...)
Exon 1.7 (A:269-329 | B:269-329)
Exon 1.8b (A:329-356 | B:329-357)
View:
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All Exon Boundaries
1: Boundary 1.1c/1.3b
2: Boundary 1.3b/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6b
5: Boundary 1.6b/1.7
6: Boundary 1.7/1.8b
7: Boundary 1.8b/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000237289
1c
ENSE00001013057
chr6:
138188581-138188631
51
TNAP3_HUMAN
-
0
0
-
-
1.3b
ENST00000237289
3b
ENSE00002202018
chr6:
138192350-138192659
310
TNAP3_HUMAN
1-99
99
2
A:6-99
B:5-99
94
95
1.4
ENST00000237289
4
ENSE00002197706
chr6:
138195982-138196172
191
TNAP3_HUMAN
99-162
64
2
A:99-162 (gaps)
B:99-154
64
56
1.5
ENST00000237289
5
ENSE00000764532
chr6:
138196825-138196972
148
TNAP3_HUMAN
163-212
50
2
A:163-212 (gaps)
B:164-212 (gaps)
50
49
1.6b
ENST00000237289
6b
ENSE00000764533
chr6:
138197133-138197303
171
TNAP3_HUMAN
212-269
58
2
A:212-269 (gaps)
B:212-269 (gaps)
58
58
1.7
ENST00000237289
7
ENSE00002165528
chr6:
138198213-138198393
181
TNAP3_HUMAN
269-329
61
2
A:269-329
B:269-329
61
61
1.8b
ENST00000237289
8b
ENSE00000764536
chr6:
138199569-138200488
920
TNAP3_HUMAN
329-636
308
2
A:329-356
B:329-357
28
29
1.9
ENST00000237289
9
ENSE00000764537
chr6:
138201208-138201389
182
TNAP3_HUMAN
636-696
61
0
-
-
1.10
ENST00000237289
10
ENSE00000798910
chr6:
138202172-138204449
2278
TNAP3_HUMAN
697-790
94
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asym.Unit (234 KB)
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