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3ZHR
Biol. Unit 2
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Asym.Unit (1.1 MB)
Biol.Unit 1 (542 KB)
Biol.Unit 2 (537 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE H747A MUTANT OF THE SUCA DOMAIN OF MYCOBACTERIUM SMEGMATIS KGD SHOWING THE ACTIVE SITE LID CLOSED
Authors
:
T. Wagner, N. Barilone, M. Bellinzoni, P. M. Alzari
Date
:
24 Dec 12 (Deposition) - 13 Nov 13 (Release) - 29 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxidoreductase, E1O
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Wagner, N. Barilone, P. M. Alzari, M. Bellinzoni
A Dual Conformation Of The Post-Decarboxylation Intermediate Is Associated With Distinct Enzyme States In Mycobacterial Alpha-Ketoglutarate Decarboxylase (Kgd).
Biochem. J. V. 457 425 2014
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
4a: THIAMINE DIPHOSPHATE (TPPa)
4b: THIAMINE DIPHOSPHATE (TPPb)
4c: THIAMINE DIPHOSPHATE (TPPc)
4d: THIAMINE DIPHOSPHATE (TPPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
TPP
2
Ligand/Ion
THIAMINE DIPHOSPHATE
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Sites
(8, 8)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
7: BC6 (SOFTWARE)
8: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ARG C:540 , SER C:604 , HIS C:605 , LEU C:606 , GLY C:644 , ASP C:645 , ALA C:646 , ALA C:647 , ASN C:678 , ILE C:680 , GLY C:681 , MG C:2002 , HOH C:3048 , HOH C:3081 , HOH C:3082 , HOH C:3107 , HOH C:3325 , HOH C:3326 , GLN D:901 , LEU D:950 , GLU D:952 , GLN D:976 , PHE D:980
BINDING SITE FOR RESIDUE TPP C2001
2
AC8
SOFTWARE
ASP C:645 , ASN C:678 , ILE C:680 , TPP C:2001 , HOH C:3082
BINDING SITE FOR RESIDUE MG C2002
3
AC9
SOFTWARE
ASP C:1004 , HIS C:1055 , ASP C:1058 , ILE C:1060 , HOH C:3240 , HOH C:3241
BINDING SITE FOR RESIDUE CA C2003
4
BC1
SOFTWARE
GLN C:901 , LEU C:950 , GLU C:952 , GLN C:976 , PHE C:980 , ARG D:540 , SER D:604 , HIS D:605 , LEU D:606 , GLY D:644 , ASP D:645 , ALA D:646 , ALA D:647 , ASN D:678 , ILE D:680 , GLY D:681 , MG D:2002 , HOH D:3038 , HOH D:3067 , HOH D:3068 , HOH D:3091 , HOH D:3250 , HOH D:3251
BINDING SITE FOR RESIDUE TPP D2001
5
BC2
SOFTWARE
ASP D:645 , ASN D:678 , ILE D:680 , TPP D:2001 , HOH D:3068
BINDING SITE FOR RESIDUE MG D2002
6
BC3
SOFTWARE
ASP D:1004 , HIS D:1055 , ASP D:1058 , ILE D:1060 , HOH D:3183 , HOH D:3184
BINDING SITE FOR RESIDUE CA D2003
7
BC6
SOFTWARE
ARG C:1054 , ASP C:1058 , GLN C:1142 , HOH C:3266
BINDING SITE FOR RESIDUE MPD C2228
8
BC7
SOFTWARE
THR D:1038 , ARG D:1054 , ASP D:1058 , GLN D:1142 , HOH D:3202
BINDING SITE FOR RESIDUE MPD D2228
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (542 KB)
Header - Biol.Unit 1
Biol.Unit 2 (537 KB)
Header - Biol.Unit 2
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