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3ZHG
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (99 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF THE NATIVE MOUSE SIGN-R1 CRD DOMAIN
Authors
:
N. Silva-Martin, S. G. Bartual, J. A. Hermoso
Date
:
21 Dec 12 (Deposition) - 15 Jan 14 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
C-Lectin Crd, Immune System, Capsular Polysaccharide.
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Silva-Martin, S. G. Bartual, E. Ramirez-Aportela, P. Chacon, C. G. Park, J. A. Hermoso
Structural Basis For Selective Recognition Of Endogenous And Microbial Polysaccharides By Macrophage Receptor Sign- R1.
Structure V. 22 1595 2014
[
close entry info
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Hetero Components
(2, 22)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
SO4
18
Ligand/Ion
SULFATE ION
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:296 , SER A:305 , LEU A:309 , LYS A:311 , HOH A:2123 , HOH A:2125 , HOH A:2126
BINDING SITE FOR RESIDUE SO4 A 501
02
AC2
SOFTWARE
LYS A:317 , SER A:318 , HOH A:2024 , HOH A:2044 , HOH A:2051
BINDING SITE FOR RESIDUE SO4 A 502
03
AC3
SOFTWARE
ASN A:205 , ASN A:234 , LYS A:316 , HOH A:2054
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
ASP A:236 , ARG A:276 , HOH A:2056
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
ARG A:276 , ASN A:288 , ILE A:289
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
LYS A:211 , LYS A:249 , HOH A:2012 , HOH A:2138 , ARG B:193 , LEU B:194 , CYS B:195
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
GLU B:296 , SER B:305 , LEU B:309 , LYS B:311 , HOH B:2061 , HOH B:2062
BINDING SITE FOR RESIDUE SO4 B 501
08
AC8
SOFTWARE
ASN B:205 , ASN B:234 , LYS B:316 , HOH B:2033 , HOH D:2072
BINDING SITE FOR RESIDUE SO4 B 503
09
AC9
SOFTWARE
ASN B:234 , SER B:235 , ASP B:236 , ARG B:276 , HOH B:2034
BINDING SITE FOR RESIDUE SO4 B 504
10
BC1
SOFTWARE
GLU C:296 , SER C:305 , LEU C:309 , LYS C:311 , HOH C:2110 , HOH C:2126
BINDING SITE FOR RESIDUE SO4 C 501
11
BC2
SOFTWARE
LYS C:317 , SER C:318 , HOH C:2037 , HOH C:2042 , HOH C:2127
BINDING SITE FOR RESIDUE SO4 C 502
12
BC3
SOFTWARE
ASN C:205 , ASN C:234 , LYS C:316
BINDING SITE FOR RESIDUE SO4 C 503
13
BC4
SOFTWARE
SER C:235 , ASP C:236 , ARG C:276 , HOH C:2047
BINDING SITE FOR RESIDUE SO4 C 504
14
BC5
SOFTWARE
ARG C:276 , ASN C:288 , ILE C:289
BINDING SITE FOR RESIDUE SO4 C 505
15
BC6
SOFTWARE
LYS C:211 , LYS C:249 , HOH C:2010 , HOH C:2128 , HOH C:2129 , ARG D:193 , LEU D:194 , CYS D:195
BINDING SITE FOR RESIDUE SO4 C 506
16
BC7
SOFTWARE
GLU D:296 , SER D:305 , LEU D:309 , LYS D:311 , HOH D:2064
BINDING SITE FOR RESIDUE SO4 D 501
17
BC8
SOFTWARE
ASN D:205 , ASN D:234 , LYS D:316 , HOH D:2072
BINDING SITE FOR RESIDUE SO4 D 503
18
BC9
SOFTWARE
ASN D:234 , SER D:235 , ASP D:236 , ARG D:276 , HOH D:2035
BINDING SITE FOR RESIDUE SO4 D 504
19
CC1
SOFTWARE
GLU A:285 , ASN A:287 , GLU A:292 , ASP A:304 , HOH A:2116 , HOH A:2117
BINDING SITE FOR RESIDUE CA A1323
20
CC2
SOFTWARE
GLU B:285 , ASN B:287 , GLU B:292 , ASP B:304
BINDING SITE FOR RESIDUE CA B1323
21
CC3
SOFTWARE
GLU C:285 , ASN C:287 , GLU C:292 , ASP C:304 , HOH C:2104
BINDING SITE FOR RESIDUE CA C1323
22
CC4
SOFTWARE
GLU D:285 , ASN D:287 , GLU D:292 , ASP D:304 , HOH D:2060
BINDING SITE FOR RESIDUE CA D1323
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:202-316,B:202-316,C:202-316,D:20...)
2: C_TYPE_LECTIN_1 (A:294-315,B:294-315,C:294-315,D:29...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
C209B_MOUSE
202-316
4
A:202-316
B:202-316
C:202-316
D:202-316
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
C209B_MOUSE
294-315
4
A:294-315
B:294-315
C:294-315
D:294-315
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3zhga_ (A:)
1b: SCOP_d3zhgb_ (B:)
1c: SCOP_d3zhgc_ (C:)
1d: SCOP_d3zhgd_ (D:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Mouse (Mus musculus) [TaxId: 10090]
(14)
1a
d3zhga_
A:
1b
d3zhgb_
B:
1c
d3zhgc_
C:
1d
d3zhgd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein & NOT Site
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Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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