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3ZH0
Biol. Unit 2
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Asym.Unit (141 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (70 KB)
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(1)
Title
:
FUNCTIONAL AND STRUCTURAL ROLE OF THE N-TERMINAL EXTENSION IN METHANOSARCINA ACETIVORANS PROTOGLOBIN
Authors
:
C. Ciaccio, A. Pesce, G. R. Tundo, L. Tilleman, S. Dewilde, L. Moens, P. A M. Bolognesi, M. Nardini, M. Coletta
Date
:
19 Dec 12 (Deposition) - 27 Mar 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxygen Transport, Spectroscopic Properties, Ligand Binding Properties, N-Terminal Trimming.
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
C. Ciaccio, A. Pesce, G. R. Tundo, L. Tilleman, L. Bertolacci, S. Dewilde, L. Moens, P. Ascenzi, M. Bolognesi, M. Nardini, M. Coletta
Functional And Structural Role Of The N-Terminal Extension In Methanosarcina Acetivorans Protoglobin.
Biochim. Biophys. Acta V. 1834 1813 2013
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FMT
2
Ligand/Ion
FORMIC ACID
2
GOL
5
Ligand/Ion
GLYCEROL
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(9, 9)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
7: BC3 (SOFTWARE)
8: BC4 (SOFTWARE)
9: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
LEU C:70 , TYR C:73 , PHE C:74 , TYR C:85 , VAL C:89 , ARG C:92 , PHE C:93 , TRP C:96 , TYR C:112 , ARG C:119 , HIS C:120 , LYS C:125 , ASN C:126 , ILE C:137 , TYR C:141 , LEU C:142 , PHE C:145 , ILE C:146 , ILE C:149 , VAL C:182 , TRP C:185 , FMT C:201 , HOH C:2061 , HOH C:2062 , HOH C:2088 , HOH C:2093
BINDING SITE FOR RESIDUE HEM C 200
2
AC6
SOFTWARE
TRP C:60 , TYR C:61 , PHE C:93 , HEM C:200
BINDING SITE FOR RESIDUE FMT C 201
3
AC7
SOFTWARE
LEU D:70 , TYR D:73 , PHE D:74 , TYR D:85 , VAL D:89 , ARG D:92 , PHE D:93 , TRP D:96 , TYR D:112 , ARG D:119 , HIS D:120 , LYS D:125 , ASN D:126 , ILE D:137 , TYR D:141 , LEU D:142 , PHE D:145 , ILE D:149 , VAL D:182 , TRP D:185 , FMT D:201 , HOH D:2071 , HOH D:2072 , HOH D:2096 , HOH D:2098
BINDING SITE FOR RESIDUE HEM D 200
4
AC8
SOFTWARE
TRP D:60 , TYR D:61 , PHE D:93 , HEM D:200
BINDING SITE FOR RESIDUE FMT D 201
5
BC1
SOFTWARE
MET C:20 , TYR C:114 , LEU C:184 , TYR C:187 , HOH C:2001 , HOH C:2124
BINDING SITE FOR RESIDUE GOL C1196
6
BC2
SOFTWARE
SER C:76 , PRO C:77 , ASP C:78 , THR C:80 , HOH C:2046
BINDING SITE FOR RESIDUE GOL C1197
7
BC3
SOFTWARE
ASP C:111 , TYR C:114
BINDING SITE FOR RESIDUE GOL C1198
8
BC4
SOFTWARE
GLU A:47 , ALA D:108 , ASP D:111 , TYR D:112 , HOH D:2084
BINDING SITE FOR RESIDUE GOL D1196
9
BC6
SOFTWARE
ASN C:126 , VAL C:131 , GLU C:132 , SER C:133 , HOH C:2081 , HOH C:2095 , HOH C:2097
BINDING SITE FOR RESIDUE GOL C1199
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain C
Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (70 KB)
Header - Biol.Unit 2
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