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3ZGG
Biol. Unit 1
Info
Asym.Unit (55 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FUCOSYLGALACTOSIDE ALPHA N-ACETYLGALACTOSAMINYLTRANSFERASE (GTA, CISAB MUTANT L266G, G268A) IN COMPLEX WITH NPE CAGED UDP-GAL (C222(1) SPACE GROUP)
Authors
:
R. Jorgensen, G. O. Batot, O. Hindsgaul, H. Tanaka, S. Perez, A. Imberty C. Breton, A. Royant, M. M. Palcic
Date
:
17 Dec 12 (Deposition) - 15 Jan 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Glycosyltransferases, Catalytic Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Jorgensen, G. Batot, K. Mannerstedt, A. Imberty, C. Breton, O. Hindsgaul, A. Royant, M. M. Palcic
Structures Of A Human Blood Group Glycosyltransferase In Complex With A Photo-Activatable Udp-Gal Derivative Reveal Two Different Binding Conformations
Acta Crystallogr. , Sect. F V. 70 1015 2014
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: 1-(2-NITROPHENYL)ETHYL UDP-GALACTO... (IUGa)
3a: MANGANESE (II) ION (MNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
IUG
2
Ligand/Ion
1-(2-NITROPHENYL)ETHYL UDP-GALACTOSE
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:121 , ALA A:122 , ILE A:123 , TYR A:126 , VAL A:184 , SER A:185 , ARG A:188 , ASP A:211 , VAL A:212 , ASP A:213 , TRP A:300 , HIS A:301 , ASP A:302 , GLU A:303 , MN A:1348 , HOH A:2039 , HOH A:2040 , HOH A:2075 , HOH A:2078
BINDING SITE FOR RESIDUE IUG A1346
2
AC2
SOFTWARE
HIS A:233 , PHE A:236 , THR A:245 , TRP A:300 , GLU A:303
BINDING SITE FOR RESIDUE GOL A1347
3
AC3
SOFTWARE
ASP A:211 , ASP A:213 , IUG A:1346 , HOH A:2078
BINDING SITE FOR RESIDUE MN A1348
[
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SAPs(SNPs)/Variants
(18, 36)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_019149 (M63H, chain A, )
02: VAR_019150 (P74S, chain A, )
03: VAR_003409 (P156L, chain A, )
04: VAR_019151 (R161H, chain A, )
05: VAR_036738 (T163M, chain A, )
06: VAR_036740 (M214R, chain A, )
07: VAR_019153 (F216I, chain A, )
08: VAR_036741 (E223D, chain A, )
09: VAR_055227 (G230R, chain A, )
10: VAR_072628 (P234A, chain A, )
11: VAR_003411 (G235S, chain A, )
12: VAR_033540 (P257L, chain A, )
13: VAR_003412 (G266M, chain A, )
14: VAR_003413 (A268A, chain A, )
15: VAR_033541 (A268R, chain A, )
16: VAR_019154 (V277M, chain A, )
17: VAR_036742 (M288R, chain A, )
18: VAR_036743 (D291N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019149
R
63
H
BGAT_HUMAN
Polymorphism
549446
A
M
63
H
02
UniProt
VAR_019150
P
74
S
BGAT_HUMAN
Polymorphism
512770
A
P
74
S
03
UniProt
VAR_003409
P
156
L
BGAT_HUMAN
Polymorphism
1053878
A
P
156
L
04
UniProt
VAR_019151
R
161
H
BGAT_HUMAN
Polymorphism
8176738
A
R
161
H
05
UniProt
VAR_036738
T
163
M
BGAT_HUMAN
Polymorphism
55756402
A
T
163
M
06
UniProt
VAR_036740
M
214
R
BGAT_HUMAN
Polymorphism
55827808
A
M
214
R
07
UniProt
VAR_019153
F
216
I
BGAT_HUMAN
Polymorphism
8176740
A
F
216
I
08
UniProt
VAR_036741
E
223
D
BGAT_HUMAN
Polymorphism
---
A
E
223
D
09
UniProt
VAR_055227
G
230
R
BGAT_HUMAN
Unclassified
---
A
G
230
R
10
UniProt
VAR_072628
P
234
A
BGAT_HUMAN
Polymorphism
---
A
P
234
A
11
UniProt
VAR_003411
G
235
S
BGAT_HUMAN
Polymorphism
8176743
A
G
235
S
12
UniProt
VAR_033540
P
257
L
BGAT_HUMAN
Polymorphism
8176745
A
P
257
L
13
UniProt
VAR_003412
L
266
M
BGAT_HUMAN
Polymorphism
8176746
A
G
266
M
14
UniProt
VAR_003413
G
268
A
BGAT_HUMAN
Polymorphism
8176747
A
A
268
A
15
UniProt
VAR_033541
G
268
R
BGAT_HUMAN
Polymorphism
8176747
A
A
268
R
16
UniProt
VAR_019154
V
277
M
BGAT_HUMAN
Polymorphism
8176748
A
V
277
M
17
UniProt
VAR_036742
M
288
R
BGAT_HUMAN
Polymorphism
---
A
M
288
R
18
UniProt
VAR_036743
D
291
N
BGAT_HUMAN
Polymorphism
---
A
D
291
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3zgga_ (A:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
Glycosyltransferase A catalytic domain
(52)
Human (Homo sapiens) [TaxId: 9606]
(52)
1a
d3zgga_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (55 KB)
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