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3ZGF
Asym. Unit
Info
Asym.Unit (220 KB)
Biol.Unit 1 (208 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FUCOSYLGALACTOSIDE ALPHA N-ACETYLGALACTOSAMINYLTRANSFERASE (GTA, CISAB MUTANT L266G, G268A) IN COMPLEX WITH IN COMPLEX WITH NPE CAGED UDP-GAL ( P2(1)2(1)2(1) SPACE GROUP)
Authors
:
R. Jorgensen, G. O. Batot, O. Hindsgaul, H. Tanaka, S. Perez, A. Imberty C. Breton, A. Royant, M. M. Palcic
Date
:
17 Dec 12 (Deposition) - 23 Jan 13 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Glycosyltransferases
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Jorgensen, G. Batot, K. Mannerstedt, A. Imberty, C. Breton, O. Hindsgaul, A. Royant, M. M. Palcic
Structures Of A Human Blood Group Glycosyltransferase In Complex With A Photo-Activatable Udp-Gal Derivative Reveal Two Different Binding Conformations
Acta Crystallogr. , Sect. F V. 70 1015 2014
[
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: 1-(2-NITROPHENYL)ETHYL UDP-GALACTO... (IUGa)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: URIDINE-5'-DIPHOSPHATE (UDPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IUG
1
Ligand/Ion
1-(2-NITROPHENYL)ETHYL UDP-GALACTOSE
2
MN
2
Ligand/Ion
MANGANESE (II) ION
3
SO4
2
Ligand/Ion
SULFATE ION
4
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:211 , ASP A:213 , UDP A:1355 , HOH A:2001
BINDING SITE FOR RESIDUE MN A 1
2
AC2
SOFTWARE
MN A:1 , PHE A:121 , ILE A:123 , TYR A:126 , VAL A:184 , ARG A:188 , ASP A:211 , VAL A:212 , ASP A:213 , LYS A:346 , ARG A:352 , HOH A:2086 , HOH A:2087
BINDING SITE FOR RESIDUE UDP A1355
3
AC3
SOFTWARE
ASP B:211 , ASP B:213 , IUG B:452 , HOH B:2001
BINDING SITE FOR RESIDUE MN B 1
4
AC4
SOFTWARE
MN B:1 , PHE B:121 , ILE B:123 , TYR B:126 , VAL B:184 , ARG B:188 , ASP B:211 , VAL B:212 , ASP B:213 , HIS B:233 , PRO B:234 , GLU B:303 , ASP B:326 , LEU B:330 , HOH B:2048 , HOH B:2049 , HOH B:2051 , HOH B:2200 , HOH B:2222 , HOH B:2232 , HOH B:2247
BINDING SITE FOR RESIDUE IUG B 452
5
AC5
SOFTWARE
SER A:171 , ARG A:199 , GLN A:275 , ARG A:279 , ARG A:282 , HOH A:2140 , HOH A:2141 , HOH A:2142
BINDING SITE FOR RESIDUE SO4 A1356
6
AC6
SOFTWARE
ARG B:176 , TYR B:178 , LYS B:179 , HOH B:2113
BINDING SITE FOR RESIDUE SO4 B1346
[
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]
SAPs(SNPs)/Variants
(23, 43)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_019150 (P74S, chain A/B, )
02: VAR_003409 (P156L, chain A/B, )
03: VAR_019151 (R161H, chain A/B, )
04: VAR_036738 (T163M, chain A/B, )
05: VAR_003410 (R176G, chain A/B, )
06: VAR_036739 (R198W, chain A/B, )
07: VAR_019152 (R199C, chain A/B, )
08: VAR_036740 (M214R, chain A/B, )
09: VAR_019153 (F216I, chain A/B, )
10: VAR_036741 (E223D, chain A/B, )
11: VAR_055227 (G230R, chain A/B, )
12: VAR_072628 (P234A, chain A/B, )
13: VAR_003411 (G235S, chain A/B, )
14: VAR_033540 (P257L, chain A/B, )
15: VAR_003412 (G266M, chain A/B, )
16: VAR_003413 (A268A, chain A/B, )
17: VAR_033541 (A268R, chain A/B, )
18: VAR_019154 (V277M, chain A/B, )
19: VAR_036742 (M288R, chain A/B, )
20: VAR_036743 (D291N, chain A/B, )
21: VAR_036744 (K346M, chain A, )
22: VAR_036745 (R352G, chain A, )
23: VAR_003414 (R352W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019150
P
74
S
BGAT_HUMAN
Polymorphism
512770
A/B
P
74
S
02
UniProt
VAR_003409
P
156
L
BGAT_HUMAN
Polymorphism
1053878
A/B
P
156
L
03
UniProt
VAR_019151
R
161
H
BGAT_HUMAN
Polymorphism
8176738
A/B
R
161
H
04
UniProt
VAR_036738
T
163
M
BGAT_HUMAN
Polymorphism
55756402
A/B
T
163
M
05
UniProt
VAR_003410
R
176
G
BGAT_HUMAN
Polymorphism
7853989
A/B
R
176
G
06
UniProt
VAR_036739
R
198
W
BGAT_HUMAN
Polymorphism
56223957
A/B
R
198
W
07
UniProt
VAR_019152
R
199
C
BGAT_HUMAN
Polymorphism
8176739
A/B
R
199
C
08
UniProt
VAR_036740
M
214
R
BGAT_HUMAN
Polymorphism
55827808
A/B
M
214
R
09
UniProt
VAR_019153
F
216
I
BGAT_HUMAN
Polymorphism
8176740
A/B
F
216
I
10
UniProt
VAR_036741
E
223
D
BGAT_HUMAN
Polymorphism
---
A/B
E
223
D
11
UniProt
VAR_055227
G
230
R
BGAT_HUMAN
Unclassified
---
A/B
G
230
R
12
UniProt
VAR_072628
P
234
A
BGAT_HUMAN
Polymorphism
---
A/B
P
234
A
13
UniProt
VAR_003411
G
235
S
BGAT_HUMAN
Polymorphism
8176743
A/B
G
235
S
14
UniProt
VAR_033540
P
257
L
BGAT_HUMAN
Polymorphism
8176745
A/B
P
257
L
15
UniProt
VAR_003412
L
266
M
BGAT_HUMAN
Polymorphism
8176746
A/B
G
266
M
16
UniProt
VAR_003413
G
268
A
BGAT_HUMAN
Polymorphism
8176747
A/B
A
268
A
17
UniProt
VAR_033541
G
268
R
BGAT_HUMAN
Polymorphism
8176747
A/B
A
268
R
18
UniProt
VAR_019154
V
277
M
BGAT_HUMAN
Polymorphism
8176748
A/B
V
277
M
19
UniProt
VAR_036742
M
288
R
BGAT_HUMAN
Polymorphism
---
A/B
M
288
R
20
UniProt
VAR_036743
D
291
N
BGAT_HUMAN
Polymorphism
---
A/B
D
291
N
21
UniProt
VAR_036744
K
346
M
BGAT_HUMAN
Polymorphism
---
A
K
346
M
22
UniProt
VAR_036745
R
352
G
BGAT_HUMAN
Polymorphism
---
A
R
352
G
23
UniProt
VAR_003414
R
352
W
BGAT_HUMAN
Polymorphism
---
A
R
352
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3zgfa_ (A:)
1b: SCOP_d3zgfb_ (B:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
automated matches
(38)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d3zgfa_
A:
1b
d3zgfb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asym.Unit (220 KB)
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Header - Biol.Unit 1
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