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Getting 'Exon' information from database.
3ZFX
Asym. Unit
Info
Asym.Unit (746 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (85 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (89 KB)
Biol.Unit 5 (87 KB)
Biol.Unit 6 (84 KB)
Biol.Unit 7 (85 KB)
Biol.Unit 8 (89 KB)
Biol.Unit 9 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EPHB1
Authors
:
J. E. Debreczeni, R. Overman, C. Truman, M. Mcalister, T. K. Attwood
Date
:
12 Dec 12 (Deposition) - 08 Jan 14 (Release) - 07 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. C. Overman, J. E. Debreczeni, C. M. Truman, M. S. Mcalister, T. K. Attwood
Completing The Structural Family Portrait Of The Human Ephb Tyrosine Kinase Domains
Protein Sci. V. 23 627 2014
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:726 , ALA A:730 , LYS A:733
BINDING SITE FOR RESIDUE SO4 A1890
[
close Site info
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SAPs(SNPs)/Variants
(4, 36)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042167 (S707T, chain A/B/C/D/E/F/G/H/I, )
2: VAR_042168 (I719V, chain A/B/C/D/E/F/G/H/I, )
3: VAR_042169 (R743Q, chain A/B/C/D/E/F/G/H/I, )
4: VAR_011805 (M847T, chain A/B/C/D/E/F/G/H/I, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042167
S
707
T
EPHB1_HUMAN
Unclassified
---
A/B/C/D/E/F/G/H/I
S
707
T
2
UniProt
VAR_042168
I
719
V
EPHB1_HUMAN
Unclassified
---
A/B/C/D/E/F/G/H/I
I
719
V
3
UniProt
VAR_042169
R
743
Q
EPHB1_HUMAN
Unclassified
---
A/B/C/D/E/F/G/H/I
R
743
Q
4
UniProt
VAR_011805
M
847
T
EPHB1_HUMAN
Polymorphism
1042785
A/B/C/D/E/F/G/H/I
M
847
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 18)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:625-651,B:625-651,C:625-651,D:62...)
2: PROTEIN_KINASE_TYR (A:740-752,B:740-752,C:740-752,D:74...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
EPHB1_HUMAN
625-651
9
A:625-651
B:625-651
C:625-651
D:625-651
E:625-651
F:625-651
G:625-651
H:625-651
I:625-651
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
EPHB1_HUMAN
740-752
9
A:740-752
B:740-752
C:740-752
D:740-752
E:740-752
F:740-752
G:740-752
H:740-752
I:740-752
[
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]
Exons
(5, 45)
Info
All Exons
Exon 1.23 (A:611-627 | B:611-627 | C:614-627 ...)
Exon 1.24b (A:630-710 (gaps) | B:631-710 (gaps...)
Exon 1.25 (A:711-770 | B:711-769 | C:711-767 ...)
Exon 1.26 (A:784-832 | B:788-832 | C:787-832 ...)
Exon 1.27 (A:833-893 | B:833-892 | C:833-892 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.22/1.23
2: Boundary 1.23/1.24b
3: Boundary 1.24b/1.25
4: Boundary 1.25/1.26
5: Boundary 1.26/1.27
6: Boundary 1.27/1.28
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7a
ENST00000398015
7a
ENSE00001930517
chr3:
134514104-134514531
428
EPHB1_HUMAN
1-20
20
0
-
-
1.13
ENST00000398015
13
ENSE00001303670
chr3:
134644658-134644722
65
EPHB1_HUMAN
20-41
22
0
-
-
1.14f
ENST00000398015
14f
ENSE00001329897
chr3:
134670213-134670894
682
EPHB1_HUMAN
42-269
228
0
-
-
1.17
ENST00000398015
17
ENSE00001767599
chr3:
134825290-134825445
156
EPHB1_HUMAN
269-321
53
0
-
-
1.18c
ENST00000398015
18c
ENSE00001645608
chr3:
134851556-134851891
336
EPHB1_HUMAN
321-433
113
0
-
-
1.19a
ENST00000398015
19a
ENSE00001723961
chr3:
134872994-134873118
125
EPHB1_HUMAN
433-474
42
0
-
-
1.20
ENST00000398015
20
ENSE00001701123
chr3:
134880860-134881022
163
EPHB1_HUMAN
475-529
55
0
-
-
1.21
ENST00000398015
21
ENSE00001728529
chr3:
134884810-134884918
109
EPHB1_HUMAN
529-565
37
0
-
-
1.22
ENST00000398015
22
ENSE00001618327
chr3:
134885784-134885848
65
EPHB1_HUMAN
565-587
23
0
-
-
1.23
ENST00000398015
23
ENSE00001719384
chr3:
134898702-134898824
123
EPHB1_HUMAN
587-628
42
9
A:611-627
B:611-627
C:614-627
D:611-627
E:611-627
F:612-627
G:611-627
H:611-627
I:611-627
17
17
14
17
17
16
17
17
17
1.24b
ENST00000398015
24b
ENSE00001648910
chr3:
134911418-134911665
248
EPHB1_HUMAN
628-710
83
9
A:630-710 (gaps)
B:631-710 (gaps)
C:631-710 (gaps)
D:630-710 (gaps)
E:631-710 (gaps)
F:631-710 (gaps)
G:631-710 (gaps)
H:629-710 (gaps)
I:629-710 (gaps)
81
80
80
81
80
80
80
82
82
1.25
ENST00000398015
25
ENSE00001639353
chr3:
134920316-134920531
216
EPHB1_HUMAN
711-782
72
9
A:711-770
B:711-769
C:711-767
D:711-770
E:711-769
F:711-769
G:711-769
H:711-769
I:711-769
60
59
57
60
59
59
59
59
59
1.26
ENST00000398015
26
ENSE00001597838
chr3:
134959990-134960139
150
EPHB1_HUMAN
783-832
50
9
A:784-832
B:788-832
C:787-832
D:784-832
E:784-832
F:788-832
G:788-832
H:784-832
I:784-832
49
45
46
49
49
45
45
49
49
1.27
ENST00000398015
27
ENSE00001792565
chr3:
134967158-134967351
194
EPHB1_HUMAN
833-897
65
9
A:833-893
B:833-892
C:833-892
D:833-893
E:833-893
F:833-893
G:833-892
H:833-892
I:833-891
61
60
60
61
61
61
60
60
59
1.28
ENST00000398015
28
ENSE00001692283
chr3:
134968178-134968333
156
EPHB1_HUMAN
897-949
53
0
-
-
1.29c
ENST00000398015
29c
ENSE00001855733
chr3:
134977854-134979309
1456
EPHB1_HUMAN
949-984
36
0
-
-
[
close EXON info
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SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d3zfxa_ (A:)
1b: SCOP_d3zfxb_ (B:)
1c: SCOP_d3zfxc_ (C:)
1d: SCOP_d3zfxd_ (D:)
1e: SCOP_d3zfxe_ (E:)
1f: SCOP_d3zfxf_ (F:)
1g: SCOP_d3zfxg_ (G:)
1h: SCOP_d3zfxh_ (H:)
1i: SCOP_d3zfxi_ (I:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d3zfxa_
A:
1b
d3zfxb_
B:
1c
d3zfxc_
C:
1d
d3zfxd_
D:
1e
d3zfxe_
E:
1f
d3zfxf_
F:
1g
d3zfxg_
G:
1h
d3zfxh_
H:
1i
d3zfxi_
I:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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