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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3ZFM
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EPHB2
Authors
:
J. E. Debreczeni, R. Overman, C. Truman, M. Mcalister, T. K. Attwood
Date
:
12 Dec 12 (Deposition) - 08 Jan 14 (Release) - 07 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. C. Overman, J. E. Debreczeni, C. M. Truman, M. S. Mcalister, T. K. Attwood
Completing The Structural Family Portrait Of The Human Ephb Tyrosine Kinase Domains
Protein Sci. V. 23 627 2014
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_032855 (V650A, chain A, )
2: VAR_042174 (D678N, chain A, )
3: VAR_032856 (H679N, chain A, )
4: VAR_042175 (R844W, chain A, )
5: VAR_032857 (M883V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032855
V
650
A
EPHB2_HUMAN
Disease (PC)
142173175
A
V
650
A
2
UniProt
VAR_042174
D
678
N
EPHB2_HUMAN
Polymorphism
28936395
A
D
678
N
3
UniProt
VAR_032856
H
679
N
EPHB2_HUMAN
Disease (PC)
---
A
H
679
N
4
UniProt
VAR_042175
R
844
W
EPHB2_HUMAN
Polymorphism
55826626
A
R
844
W
5
UniProt
VAR_032857
M
883
V
EPHB2_HUMAN
Disease (PC)
---
A
M
883
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:627-653)
2: PROTEIN_KINASE_TYR (A:742-754)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
EPHB2_HUMAN
627-653
1
A:627-653
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
EPHB2_HUMAN
742-754
1
A:742-754
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Exons
(5, 5)
Info
All Exons
Exon 1.13 (A:615-627)
Exon 1.14 (A:632-712 (gaps))
Exon 1.15 (A:713-765)
Exon 1.16 (A:789-834)
Exon 1.17 (A:835-894)
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All Exon Boundaries
1: Boundary 1.12b/1.13
2: Boundary 1.13/1.14
3: Boundary 1.14/1.15
4: Boundary 1.15/1.16
5: Boundary 1.16/1.17
6: Boundary 1.17/1.18a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000400191
1a
ENSE00001464057
chr1:
23037458-23037536
79
EPHB2_HUMAN
1-21
21
0
-
-
1.3
ENST00000400191
3
ENSE00001066292
chr1:
23107914-23107978
65
EPHB2_HUMAN
21-42
22
0
-
-
1.4
ENST00000400191
4
ENSE00000955704
chr1:
23110885-23111569
685
EPHB2_HUMAN
43-271
229
0
-
-
1.6
ENST00000400191
6
ENSE00000955705
chr1:
23189530-23189685
156
EPHB2_HUMAN
271-323
53
0
-
-
1.7a
ENST00000400191
7a
ENSE00000955706
chr1:
23191370-23191705
336
EPHB2_HUMAN
323-435
113
0
-
-
1.8a
ENST00000400191
8a
ENSE00000908689
chr1:
23208852-23208976
125
EPHB2_HUMAN
435-476
42
0
-
-
1.10b
ENST00000400191
10b
ENSE00000908690
chr1:
23219377-23219539
163
EPHB2_HUMAN
477-531
55
0
-
-
1.11
ENST00000400191
11
ENSE00000908691
chr1:
23221965-23222073
109
EPHB2_HUMAN
531-567
37
0
-
-
1.12b
ENST00000400191
12b
ENSE00000908692
chr1:
23222907-23222971
65
EPHB2_HUMAN
567-589
23
0
-
-
1.13
ENST00000400191
13
ENSE00000908693
chr1:
23232480-23232602
123
EPHB2_HUMAN
589-630
42
1
A:615-627
13
1.14
ENST00000400191
14
ENSE00000908694
chr1:
23233203-23233450
248
EPHB2_HUMAN
630-712
83
1
A:632-712 (gaps)
81
1.15
ENST00000400191
15
ENSE00001647153
chr1:
23234446-23234661
216
EPHB2_HUMAN
713-784
72
1
A:713-765
53
1.16
ENST00000400191
16
ENSE00001769046
chr1:
23235515-23235664
150
EPHB2_HUMAN
785-834
50
1
A:789-834
46
1.17
ENST00000400191
17
ENSE00000908697
chr1:
23236875-23237068
194
EPHB2_HUMAN
835-899
65
1
A:835-894
60
1.18a
ENST00000400191
18a
ENSE00000908698
chr1:
23238937-23239092
156
EPHB2_HUMAN
899-951
53
0
-
-
1.18c
ENST00000400191
18c
ENSE00001273135
chr1:
23239955-23240057
103
EPHB2_HUMAN
951-985
35
0
-
-
1.18g
ENST00000400191
18g
ENSE00001933590
chr1:
23240151-23241818
1668
EPHB2_HUMAN
986-1055
70
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3zfma_ (A:)
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d3zfma_
A:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (46 KB)
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